WormBase Tree Display for Variation: WBVar00130448
expand all nodes | collapse all nodes | view schema
| WBVar00130448 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00130448 | ||||
| Other_name | cbs65969 | |||||
| cb65969 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrIV:g.4393066C>A | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc4260b | ||
| Flanking_sequences | ttgagatttttttttcgaaaatttg | atcttcaaaagtgtcaaaaccttac | ||||
| Mapping_target | cb25.fpc4260b | |||||
| Type_of_mutation | Substitution | C | A | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 233 110 86 57 54 39 36 32 31 28 27 26 26 25 23 23 19 18 17 16 15 11 10 8 8 8 7 7 | ||
| TTCGAA | AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI | 421 180 154 132 87 26 | ||||
| TGCA | CviRI, HpyCH4V | 500 368 109 23 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 233 116 103 94 88 85 66 57 49 26 24 21 16 14 8 | ||||
| GANTC | HinfI | 565 266 85 43 41 | ||||
| TCNGA | Hpy188I | 226 160 144 116 86 70 62 26 26 25 24 17 10 8 | ||||
| GAWTC | TfiI | 565 266 85 43 41 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 233 110 86 57 54 39 36 32 31 28 26 26 25 23 23 19 18 17 17 16 15 11 10 10 8 8 8 7 7 | |||
| TTCGAA | AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI | 413 180 154 132 87 26 8 | ||||
| TGCA | CviRI, HpyCH4V | 868 109 23 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 233 116 95 94 88 85 66 57 49 26 24 21 16 14 8 8 | ||||
| GANTC | HinfI | 503 266 85 62 43 41 | ||||
| TCNGA | Hpy188I | 226 160 144 116 86 70 62 42 26 26 24 10 8 | ||||
| GAWTC | TfiI | 503 266 85 62 43 41 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00000329 | ||||
| Transcript | CBG21774.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG21774.1:c.525+26G>T | |||||
| Intron_number | 5/8 | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
