WormBase Tree Display for Variation: WBVar00130437
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| WBVar00130437 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00130437 | ||||
| Other_name | cbs65958 | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc4260b | ||
| Flanking_sequences | aagatccaataacatctcataaaaaacagggtgaagctttctctagggct | gataactcaagatggcgtttgcccctggtcgtatgaactccggagattat | ||||
| Mapping_target | cb25.fpc4260b | |||||
| Type_of_mutation | Substitution | A | G | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 313 283 276 72 56 | ||
| CTAG | BfaI, MaeI, XspI | 303 199 199 131 94 68 6 | ||||
| CCNNGG | BsaJI, BseDI, BssECI, SecI | 477 266 257 | ||||
| CCRYGG | BstDSI, BtgI, DsaI | 1000 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 410 331 203 28 28 | ||||
| CAC | HindI | 153 153 128 103 82 77 74 45 41 41 24 23 23 11 8 8 6 | ||||
| GTNAC | MaeIII | 957 43 | ||||
| CAYNNNNRTG | MslI, SmiMI | 1000 | ||||
| GTSAC | NmuCI, Tsp45I | 1000 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 308 276 139 72 72 56 43 29 5 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 596 276 72 56 | |||
| CTAG | BfaI, MaeI, XspI | 303 205 199 131 94 68 | ||||
| CCNNGG | BsaJI, BseDI, BssECI, SecI | 417 266 257 60 | ||||
| CCRYGG | BstDSI, BtgI, DsaI | 583 417 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 438 331 203 28 | ||||
| CAC | HindI | 163 153 128 103 77 74 45 42 41 40 28 24 23 23 11 8 8 6 3 | ||||
| GTNAC | MaeIII | 501 456 43 | ||||
| CAYNNNNRTG | MslI, SmiMI | 582 418 | ||||
| GTSAC | NmuCI, Tsp45I | 957 43 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 447 276 72 72 56 43 29 5 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
