WormBase Tree Display for Variation: WBVar00130434
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| WBVar00130434 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00130434 | ||||
| Other_name | cbs65955 | |||||
| HGVSg | chrIV:g.4521940T>G | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc4260b | ||
| Flanking_sequences | tcacgttcaattggactagaaattggttggttagtcagcgaatgtaattc | gatgaaacggtagttactgtttcacatgcttgatatttaagaaaaaataa | ||||
| Mapping_target | cb25.fpc4260b | |||||
| Type_of_mutation | Substitution | A | C | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 823 115 54 8 | ||
| TGATCA | BclI, BsiQI, FbaI, Ksp22I | 1000 | ||||
| CTAG | BfaI, MaeI, XspI | 507 244 221 28 | ||||
| CATG | CviAII, FatI, HpyCH4I, Hsp92II, NlaIII | 380 299 226 95 | ||||
| GTYRAC | HincII, HindII | 938 62 | ||||
| CAC | HindI | 194 158 96 95 72 54 53 47 46 38 29 25 18 18 14 12 7 6 6 5 3 2 2 | ||||
| GTNNAC | Hpy8I | 693 221 62 24 | ||||
| CAYNNNNRTG | MslI, SmiMI | 853 147 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 251 173 162 92 78 74 54 41 25 23 12 8 7 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 530 293 115 54 8 | |||
| TGATCA | BclI, BsiQI, FbaI, Ksp22I | 553 447 | ||||
| CTAG | BfaI, MaeI, XspI | 728 244 28 | ||||
| CATG | CviAII, FatI, HpyCH4I, Hsp92II, NlaIII | 380 299 146 95 80 | ||||
| GTYRAC | HincII, HindII | 515 423 62 | ||||
| CAC | HindI | 194 158 96 95 72 54 53 47 46 38 31 29 18 18 14 12 7 6 5 3 2 2 | ||||
| GTNNAC | Hpy8I | 399 294 221 62 24 | ||||
| CAYNNNNRTG | MslI, SmiMI | 443 410 147 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 251 164 162 92 78 74 54 41 37 23 9 8 7 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00040445 | ||||
| Transcript | CBG21751.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG21751.1:c.32-36T>G | |||||
| Intron_number | 1/2 | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
