WormBase Tree Display for Variation: WBVar00130391
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| WBVar00130391 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00130391 | ||||
| Other_name | cbs65912 | |||||
| HGVSg | chrIV:g.4557772T>A | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc4260b | ||
| Flanking_sequences | tttctgaactgtcggtttctgaaacgtccaggaccccgtaaaacttgtaa | agaaaagctcctttcatagaggagcttcgtcaaaaatgtgaaaaatattc | ||||
| Mapping_target | cb25.fpc4260b | |||||
| Type_of_mutation | Substitution | A | T | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 209 144 20 | ||
| AGCT | AluI | 476 317 164 26 17 | ||||
| ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 225 218 163 130 86 23 16 16 16 16 16 15 15 15 15 15 | ||||
| GCNNGC | BstC8I, Cac8I | 707 293 | ||||
| RGCY | CviJI, CviTI | 291 229 181 88 68 53 43 26 17 4 | ||||
| TCNGA | Hpy188I | 531 283 16 16 16 16 16 16 15 15 15 15 15 15 | ||||
| TTAA | MseI, Tru1I, Tru9I | 425 192 167 136 40 21 19 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 384 141 116 93 78 66 39 34 29 16 4 | ||||
| AATATT | SspI | 377 253 201 169 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 336 243 209 144 48 20 | |||
| AGCT | AluI | 493 317 164 26 | ||||
| ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 241 218 163 130 86 23 16 16 16 16 15 15 15 15 15 | ||||
| GCNNGC | BstC8I, Cac8I | 642 293 65 | ||||
| RGCY | CviJI, CviTI | 291 229 88 71 68 65 62 53 43 26 4 | ||||
| TCNGA | Hpy188I | 531 283 31 16 16 16 16 16 15 15 15 15 15 | ||||
| TTAA | MseI, Tru1I, Tru9I | 444 192 167 136 40 21 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 336 141 116 93 78 66 48 39 34 29 20 | ||||
| AATATT | SspI | 630 201 169 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00040442 | ||||
| Transcript | CBG21746.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG21746.1:c.89-351A>T | |||||
| Intron_number | 1/10 | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
