WormBase Tree Display for Variation: WBVar00127725

WBVar00127725 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00127725
    Other_name: cbs63246
    HGVSg: chrI:g.14744658T>A
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc4140
    Flanking_sequences: gaagttcctccttctcgatctcaagacggcggatgatcttttgcatctcg ggacggagcgtcctccctctccaagttgatcggtgagatccttgatctct
    Mapping_target: cb25.fpc4140
    Type_of_mutation: Substitution: T A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: GACNNNNNGTC AhdI, AspEI, Eam1105I, EclHKI, NruGI 507 493
        AGCT AluI 284 201 189 127 62 56 41 21 10 9
        CYCGRG Ama87I, AvaI, BcoI, BsiHKCI, BsoBI, Eco88I, Nli3877I, NspIII 495 193 129 90 51 21 21
        CTCGAG BssHI, PaeR7I, SciI, S, fr274I, SlaI, TliI, XhoI 495 193 129 90 51 21 21
        RGCY CviJI, CviTI 138 122 121 96 68 63 47 42 41 27 26 22 20 20 18 18 17 14 12 12 10 10 9 8 7 6 6
        TCGA EsaBC3I, TaqI, TthHB8I 126 120 99 96 78 57 55 54 51 48 36 33 33 33 27 21 16 12 5
        CAC HindI 357 115 107 82 66 54 49 37 36 34 27 13 8 6 6 3
        TCNNGA Hpy178III, Hpy188III 193 174 133 114 111 99 54 39 33 33 9 8
        GTNNAC Hpy8I 501 499
        CTYRAG SmlI 193 188 129 85 84 75 54 51 43 41 21 21 15
      Polymorphic_strain_digest: GACNNNNNGTC AhdI, AspEI, Eam1105I, EclHKI, NruGI 1000
        AGCT AluI 250 201 189 127 62 56 41 34 21 10 9
        CYCGRG Ama87I, AvaI, BcoI, BsiHKCI, BsoBI, Eco88I, Nli3877I, NspIII 414 193 129 90 81 51 21 21
        CTCGAG BssHI, PaeR7I, SciI, S, fr274I, SlaI, TliI, XhoI 414 193 129 90 81 51 21 21
        RGCY CviJI, CviTI 138 121 96 94 68 63 47 42 41 28 27 26 22 20 20 18 18 17 14 12 12 10 10 9 8 7 6 6
        TCGA EsaBC3I, TaqI, TthHB8I 126 99 96 87 78 57 55 54 51 48 36 33 33 33 33 27 21 16 12 5
        CAC HindI 357 115 107 88 82 66 49 37 36 27 13 8 6 6 3
        TCNNGA Hpy178III, Hpy188III 193 174 133 114 111 74 54 39 33 33 25 9 8
        GTNNAC Hpy8I 1000
        CTYRAG SmlI 193 188 129 84 75 58 54 51 43 41 27 21 21 15
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00038900
    Transcript: CBG19730.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG19730.1:c.4598A>T
        HGVSp: CBP04616.1:p.His1533Leu
        cDNA_position: 4725
        CDS_position: 4598
        Protein_position: 1533
        Exon_number: 7/11
        Codon_change: cAc/cTc
        Amino_acid_change: H/L
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP