WormBase Tree Display for Variation: WBVar00121868
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WBVar00121868 | Evidence | Paper_evidence | WBPaper00030778 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00121868 | |||
Other_name | cbs57389 | ||||
HGVSg | chrI:g.3519874A>G | ||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc3857b | |
Flanking_sequences | cattctttcttccaccgccgccggatcgtttcaagcagcacatgataata | gaatgagtgtcaagatgagaatcagagcgaatgcaatcagcagcattaga | |||
Mapping_target | cb25.fpc3857b | ||||
Type_of_mutation | Substitution | A | G | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP (2) | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis briggsae | |||
Strain | WBStrain00041077 | ||||
Laboratory | CP | ||||
Person | WBPerson3706 | ||||
WBPerson227 | |||||
WBPerson225 | |||||
Status | Live | ||||
Affects | Gene | WBGene00035290 | |||
WBGene00035291 | |||||
Transcript | CBG14916.1 | VEP_consequence | 3_prime_UTR_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | CBG14916.1:c.*1657A>G | ||||
cDNA_position | 2224 | ||||
Exon_number | 10/20 | ||||
CBG14916.2 | VEP_consequence | 3_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | CBG14916.2:c.*1657A>G | ||||
cDNA_position | 2224 | ||||
Exon_number | 10/19 | ||||
CBG14916.3 | VEP_consequence | 3_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | CBG14916.3:c.*1420A>G | ||||
cDNA_position | 1987 | ||||
Exon_number | 9/19 | ||||
CBG14916.4 | VEP_consequence | 3_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | CBG14916.4:c.*1420A>G | ||||
cDNA_position | 1987 | ||||
Exon_number | 9/18 | ||||
CBG14917a.1 | VEP_consequence | missense_variant | |||
VEP_impact | MODERATE | ||||
HGVSc | CBG14917a.1:c.3302T>C | ||||
HGVSp | CBP45241.1:p.Leu1101Pro | ||||
cDNA_position | 3302 | ||||
CDS_position | 3302 | ||||
Protein_position | 1101 | ||||
Exon_number | 10/14 | ||||
Codon_change | cTt/cCt | ||||
Amino_acid_change | L/P | ||||
CBG14917b.1 | VEP_consequence | missense_variant | |||
VEP_impact | MODERATE | ||||
HGVSc | CBG14917b.1:c.3389T>C | ||||
HGVSp | CBP42473.1:p.Leu1130Pro | ||||
cDNA_position | 3389 | ||||
CDS_position | 3389 | ||||
Protein_position | 1130 | ||||
Exon_number | 11/15 | ||||
Codon_change | cTt/cCt | ||||
Amino_acid_change | L/P | ||||
CBG14917c.1 | VEP_consequence | missense_variant | |||
VEP_impact | MODERATE | ||||
HGVSc | CBG14917c.1:c.3389T>C | ||||
HGVSp | CBP41214.1:p.Leu1130Pro | ||||
cDNA_position | 3389 | ||||
CDS_position | 3389 | ||||
Protein_position | 1130 | ||||
Exon_number | 11/16 | ||||
Codon_change | cTt/cCt | ||||
Amino_acid_change | L/P | ||||
CBG14917d.1 | VEP_consequence | missense_variant | |||
VEP_impact | MODERATE | ||||
HGVSc | CBG14917d.1:c.3302T>C | ||||
HGVSp | CBP38503.1:p.Leu1101Pro | ||||
cDNA_position | 3302 | ||||
CDS_position | 3302 | ||||
Protein_position | 1101 | ||||
Exon_number | 10/15 | ||||
Codon_change | cTt/cCt | ||||
Amino_acid_change | L/P | ||||
Reference | WBPaper00030778 | ||||
Remark | Predicted by: ssaha-SNP v2.0 | ||||
This SNP was observed in 1 sequencing read(s) | |||||
Method | SNP |