WormBase Tree Display for Variation: WBVar00118213
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| WBVar00118213 | Evidence | Paper_evidence | WBPaper00030778 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00118213 | |||
| Other_name | cbs53734 | ||||
| HGVSg | chrI:g.7752325G>C | ||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc2852 | |
| Flanking_sequences | tttttttgaatgcttttctagattgcttgttactttgcgtgaaaattgta | agctctggaatattcagagcgagctcttcacgatgttttttgactgcttc | |||
| Mapping_target | cb25.fpc2852 | ||||
| Type_of_mutation | Substitution | G | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| RFLP | Reference_strain_digest (21) | ||||
| Polymorphic_strain_digest (21) | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis briggsae | |||
| Strain | WBStrain00041077 | ||||
| Laboratory | CP | ||||
| Person | WBPerson3706 | ||||
| WBPerson227 | |||||
| WBPerson225 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00033078 | |||
| Transcript | CBG12070a.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | CBG12070a.1:c.615C>G | ||||
| HGVSp | CBP48680.1:p.Leu205%3D | ||||
| cDNA_position | 834 | ||||
| CDS_position | 615 | ||||
| Protein_position | 205 | ||||
| Exon_number | 5/36 | ||||
| Codon_change | ctC/ctG | ||||
| Amino_acid_change | L | ||||
| CBG12070b.1 | VEP_consequence | 5_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | CBG12070b.1:c.-1125C>G | ||||
| cDNA_position | 834 | ||||
| Exon_number | 4/47 | ||||
| CBG12070d.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | CBG12070d.1:c.615C>G | ||||
| HGVSp | CBP48656.1:p.Leu205%3D | ||||
| cDNA_position | 615 | ||||
| CDS_position | 615 | ||||
| Protein_position | 205 | ||||
| Exon_number | 4/33 | ||||
| Codon_change | ctC/ctG | ||||
| Amino_acid_change | L | ||||
| CBG12070e.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | CBG12070e.1:c.615C>G | ||||
| HGVSp | CBP48697.1:p.Leu205%3D | ||||
| cDNA_position | 615 | ||||
| CDS_position | 615 | ||||
| Protein_position | 205 | ||||
| Exon_number | 4/33 | ||||
| Codon_change | ctC/ctG | ||||
| Amino_acid_change | L | ||||
| Reference | WBPaper00030778 | ||||
| Remark | Predicted by: ssaha-SNP v2.0 | ||||
| This SNP was observed in 1 sequencing read(s) | |||||
| Method | SNP |
