WormBase Tree Display for Variation: WBVar00113236

WBVar00113236 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00113236
    Other_name: cbs48757
      cb48757 Paper_evidence: WBPaper00055507
    HGVSg: chrI:g.6124764A>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc1417
    Flanking_sequences: agagaaaatacatgtgcgctttgag taaattatctctgttctttcaaaag
    Mapping_target: cb25.fpc1417
    Type_of_mutation: Substitution: A C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RAATTY AcsI, ApoI, XapI 397 296 170 116 12 9
        AGCT AluI 354 280 265 83 18
        GCNNNNNNNGC BstMWI, HpyF10VI, MwoI 763 237
        RGCY CviJI, CviTI 280 246 168 116 83 54 19 18 16
      Polymorphic_strain_digest: RAATTY AcsI, ApoI, XapI 397 296 170 116 21
        AGCT AluI 354 280 136 129 83 18
        GCNNNNNNNGC BstMWI, HpyF10VI, MwoI 504 259 237
        RGCY CviJI, CviTI 280 168 129 117 116 83 54 19 18 16
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00030075
    Transcript: CBG08244a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG08244a.1:c.1063-125T>G
        Intron_number: 8/8
      CBG08244b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG08244b.1:c.1024-125T>G
        Intron_number: 7/7
      CBG08244c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG08244c.1:c.1027-125T>G
        Intron_number: 8/9
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP