WormBase Tree Display for Variation: WBVar00113235

WBVar00113235 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00113235
    Other_name: cbs48756
      cb48756 Paper_evidence: WBPaper00055507
    HGVSg: chrI:g.6124673A>T
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc1417
    Flanking_sequences: catgtgtatttataaatttgatcaa aattttttaaatttggttgtcgttt
    Mapping_target: cb25.fpc1417
    Type_of_mutation: Substitution: A T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RAATTY AcsI, ApoI, XapI 488 296 170 25 12 9
        AGCT AluI 281 280 265 174
        GCNNNNNNNGC BstMWI, HpyF10VI, MwoI 672 328
        RGCY CviJI, CviTI 280 246 149 145 116 29 19 16
      Polymorphic_strain_digest: RAATTY AcsI, ApoI, XapI 488 296 170 25 21
        AGCT AluI 281 280 174 136 129
        GCNNNNNNNGC BstMWI, HpyF10VI, MwoI 413 328 259
        RGCY CviJI, CviTI 280 149 145 129 117 116 29 19 16
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00030075
    Transcript: CBG08244a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG08244a.1:c.1063-34T>A
        Intron_number: 8/8
      CBG08244b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG08244b.1:c.1024-34T>A
        Intron_number: 7/7
      CBG08244c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG08244c.1:c.1027-34T>A
        Intron_number: 8/9
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP