WormBase Tree Display for Variation: WBVar00112641

WBVar00112641 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00112641
    Other_name: cbs48162
    HGVSg: chrX:g.18312626A>T
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0829
    Flanking_sequences: taaaaagtatttttcagttaatttacgaccattttgacaattttcacaag cggaagctcggctgtcaagttgtccgatcctttctgaaaactttaaagag
    Mapping_target: cb25.fpc0829
    Type_of_mutation: Substitution: T A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: AACGTT AclI, Psp1406I 602 398
        RAATTY AcsI, ApoI, XapI 624 280 96
        ACNGT Bst4CI, HpyCH4III, TaaI, Tsp4CI 380 286 184 76 65 9
        TCGA EsaBC3I, TaqI, TthHB8I 502 293 205
        CAC HindI 157 142 120 88 74 59 57 47 32 32 29 29 27 24 21 18 13 8 6 5 4 4 2 2
        TCNGA Hpy188I 421 206 137 95 81 27 23 10
        TTAA MseI, Tru1I, Tru9I 449 213 208 76 36 18
        AATT Sse9I, TasI, Tsp509I, TspEI 463 185 137 95 70 26 19 5
        AATATT SspI 556 444
      Polymorphic_strain_digest: AACGTT AclI, Psp1406I 1000
        RAATTY AcsI, ApoI, XapI 443 280 168 96 13
        ACNGT Bst4CI, HpyCH4III, TaaI, Tsp4CI 456 286 184 65 9
        TCGA EsaBC3I, TaqI, TthHB8I 502 293 190 15
        CAC HindI 157 142 120 74 68 59 57 53 47 32 32 29 27 21 20 18 13 8 6 5 4 4 2 2
        TCNGA Hpy188I 412 206 137 104 95 27 10 9
        TTAA MseI, Tru1I, Tru9I 449 213 208 94 36
        AATT Sse9I, TasI, Tsp509I, TspEI 438 185 168 95 70 26 13 5
        AATATT SspI 1000
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00029609
    Transcript: CBG07625a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG07625a.1:c.748+146T>A
        Intron_number: 6/11
      CBG07625b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG07625b.1:c.610+146T>A
        Intron_number: 6/11
      CBG07625c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG07625c.1:c.571+146T>A
        Intron_number: 5/9
      CBG07625d.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG07625d.1:c.829+146T>A
        Intron_number: 6/10
      CBG07625e.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG07625e.1:c.562+146T>A
        Intron_number: 6/10
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP