WormBase Tree Display for Variation: WBVar00112632
expand all nodes | collapse all nodes | view schema
| WBVar00112632 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00112632 | ||||
| Other_name | cbs48153 | |||||
| HGVSg | chrX:g.18312744A>C | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0829 | ||
| Flanking_sequences | aggattgctttattggcacagtggtaggtttttaggacagacttgcaaag | gaaaactgagaaaaaacgtttgacacttttgaaaaatcagatacagttcc | ||||
| Mapping_target | cb25.fpc0829 | |||||
| Type_of_mutation | Substitution | T | G | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | AACGTT | AclI, Psp1406I | 516 484 | ||
| RAATTY | AcsI, ApoI, XapI | 742 162 96 | ||||
| ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 380 286 183 76 75 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 502 385 87 26 | ||||
| CAC | HindI | 157 138 120 88 74 73 57 48 47 32 29 29 27 24 21 15 6 5 4 4 2 | ||||
| TCNGA | Hpy188I | 539 206 95 81 46 23 10 | ||||
| TTAA | MseI, Tru1I, Tru9I | 567 208 95 76 36 18 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 463 162 137 123 70 26 19 | ||||
| AATATT | SspI | 562 438 | ||||
| Polymorphic_strain_digest | AACGTT | AclI, Psp1406I | 1000 | |||
| RAATTY | AcsI, ApoI, XapI | 561 168 162 96 13 | ||||
| ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 456 286 183 75 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 502 385 72 26 15 | ||||
| CAC | HindI | 157 138 120 74 73 68 57 53 48 47 32 29 27 21 20 15 6 5 4 4 2 | ||||
| TCNGA | Hpy188I | 530 206 104 95 46 10 9 | ||||
| TTAA | MseI, Tru1I, Tru9I | 567 208 95 94 36 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 438 168 162 123 70 26 13 | ||||
| AATATT | SspI | 1000 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00029609 | ||||
| Transcript | CBG07625a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG07625a.1:c.748+28T>G | |||||
| Intron_number | 6/11 | |||||
| CBG07625b.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG07625b.1:c.610+28T>G | |||||
| Intron_number | 6/11 | |||||
| CBG07625c.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG07625c.1:c.571+28T>G | |||||
| Intron_number | 5/9 | |||||
| CBG07625d.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG07625d.1:c.829+28T>G | |||||
| Intron_number | 6/10 | |||||
| CBG07625e.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG07625e.1:c.562+28T>G | |||||
| Intron_number | 6/10 | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
