WormBase Tree Display for Variation: WBVar00110998
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| WBVar00110998 | Evidence | Paper_evidence | WBPaper00030778 | ||
|---|---|---|---|---|---|
| WBPaper00055507 | |||||
| Name | Public_name | WBVar00110998 | |||
| Other_name | cbs46519 | ||||
| cb46519 | Paper_evidence | WBPaper00055507 | |||
| HGVSg | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0143b | |
| Flanking_sequences | ttcaaaaaggtcatacctacgaata | cgtgtcgttgctgtcaataaggctg | |||
| Mapping_target | cb25.fpc0143b | ||||
| Type_of_mutation | Substitution | T | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| RFLP | Reference_strain_digest (22) | ||||
| Polymorphic_strain_digest (22) | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis briggsae | |||
| Strain | WBStrain00041077 | ||||
| Laboratory | CP | ||||
| Person | WBPerson3706 | ||||
| WBPerson227 | |||||
| WBPerson225 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00028512 | |||
| Transcript | CBG06205a.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSp | CBP48915.1:p.Tyr4103%3D | ||||
| cDNA_position | 12438 | ||||
| CDS_position | 12309 | ||||
| Protein_position | 4103 | ||||
| Exon_number | 24/31 | ||||
| Codon_change | taT/taC | ||||
| Amino_acid_change | Y | ||||
| CBG06205b.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSp | CBP49188.1:p.Tyr3550%3D | ||||
| cDNA_position | 10985 | ||||
| CDS_position | 10650 | ||||
| Protein_position | 3550 | ||||
| Exon_number | 17/23 | ||||
| Codon_change | taT/taC | ||||
| Amino_acid_change | Y | ||||
| CBG06205c.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSp | CBP49200.1:p.Tyr4423%3D | ||||
| cDNA_position | 13269 | ||||
| CDS_position | 13269 | ||||
| Protein_position | 4423 | ||||
| Exon_number | 26/32 | ||||
| Codon_change | taT/taC | ||||
| Amino_acid_change | Y | ||||
| CBG06205d.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSp | CBP48967.1:p.Tyr4399%3D | ||||
| cDNA_position | 13197 | ||||
| CDS_position | 13197 | ||||
| Protein_position | 4399 | ||||
| Exon_number | 25/31 | ||||
| Codon_change | taT/taC | ||||
| Amino_acid_change | Y | ||||
| CBG06205e.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSp | CBP48866.1:p.Tyr4112%3D | ||||
| cDNA_position | 12465 | ||||
| CDS_position | 12336 | ||||
| Protein_position | 4112 | ||||
| Exon_number | 25/31 | ||||
| Codon_change | taT/taC | ||||
| Amino_acid_change | Y | ||||
| Reference | WBPaper00030778 | ||||
| WBPaper00055507 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | ||||
| This SNP was observed in 1 sequencing read(s) | |||||
| Method | SNP |
