WormBase Tree Display for Variation: WBVar00108442

WBVar00108442 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00108442
    Other_name: cbs43963
      cb43963 Paper_evidence: WBPaper00055507
    HGVSg: chrIII:g.10933931T>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0066
    Flanking_sequences: actttttgatatctttcacagtaac aaaatatataagctcaacgttgacg
    Mapping_target: cb25.fpc0066
    Type_of_mutation: Substitution: T C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CCNGG Bme1390I, BssKI, BstSCI, MspR9I, ScrFI 969 31
        CCWGG BseBI, BsiLI, Bst2UI, BstNI, BstOI, EcoRII, MvaI, Psp6I, PspGI 969 31
        ACCWGGT MabI, SexAI 1000
        T Sse9I, TasI, Tsp509I, TspEI 226 149 107 62 60 57 37 34 34 31 27 24 21 20 20 15 14 14 14 10 9 8 7
      Polymorphic_strain_digest: CCNGG Bme1390I, BssKI, BstSCI, MspR9I, ScrFI 700 269 31
        CCWGG BseBI, BsiLI, Bst2UI, BstNI, BstOI, EcoRII, MvaI, Psp6I, PspGI 700 269 31
        ACCWGGT MabI, SexAI 698 302
        T Sse9I, TasI, Tsp509I, TspEI 226 149 107 62 60 57 37 34 34 31 27 24 21 21 20 20 15 14 14 10 9 8
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00026410
    Transcript: CBG03570.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG03570.1:c.114+408T>C
        Intron_number: 3/7
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP