WormBase Tree Display for Variation: WBVar00106143
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| WBVar00106143 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00106143 | |||
| Other_name | pas11002 | ||||
| snp_Y17G7B[13] | |||||
| cewivar00418806 | |||||
| Y17G7B.9.1:c.1213-191A>T | |||||
| HGVSg | CHROMOSOME_II:g.12029341T>A | ||||
| Sequence_details | SMap | S_parent | Sequence | Y17G7B | |
| Flanking_sequences | cgatgagacatccatgatgttccttgaatatcttctgcgtctaaatccatcgttccgaactttttctcttcgccctcctcgccttcgtttcggagaattggctcttttatctggaattttttttaaattaaagatttttttttgaaaaaagttgtttttatttgaaataaactttttgagattttttgacatttcagaattttttaaaaatcagttttggagtttttttagatttgaaaaaaaatattctgaaaaaaatccgattttctgaaatattgcctaattttcagtaggttttta | ttttttttttcgtttttttctcgaaatttcagacgtggcaaaaatctaaacttatcgaaaaaaaaaaaacaacttggagttttttttttgaattttggagaattttggagtatttatttcaataaaaatttacaatttggcgttttagaatttttttttgtaaaaaaattaattttcagtttttgagaataataaattttatttttttgattttattgaattttttctgaaattttttcgcattaaaatttgtttttttttggcatttctgaagtttttctgaaagatttttgaacaaat | |||
| Mapping_target | Y17G7B | ||||
| Type_of_mutation | Substitution | T | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
| WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| SNP_Wicks | |||||
| History | Acquires_merge | WBVar00246805 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00000892 | |||
| Transcript | Y17G7B.9.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y17G7B.9.1:c.1213-191A>T | ||||
| Intron_number | 9/10 | ||||
| Reference | WBPaper00004703 | ||||
| Method | WGS_Pasadena_Quinlan |
