WormBase Tree Display for Variation: WBVar00105532

WBVar00105532 Name: Public_name: WBVar00105532
    Other_name: pas10391
      snp_C52A11[1]
      cewivar00094605
      C52A11.4c.1:c.1031-178G>A
      C52A11.4d.1:c.1691-178G>A
      C52A11.4b.1:c.1604-178G>A
      C52A11.4f.1:c.1604-178G>A
      C52A11.4g.1:c.977-178G>A
      C52A11.4a.1:c.1604-178G>A
      C52A11.4e.1:c.977-178G>A
    HGVSg: CHROMOSOME_II:g.10759158C>T
  Sequence_details: SMap: S_parent: Sequence: C52A11
    Flanking_sequences: tttaaccataccacgctaattcaaatcttacctctagaataaggtcgtgcactttgataactccactggacgaggcagccgagcgtggaaccaacgacttgacaaaaatgccaccgatttcttctgcaaaatacctcgtatttcacactacgtatccgttttttttgttgctcggtggttggagggcgatataattcagtttagagcctctgagcagattcagtctatacatacacaagagggtcctttctctctgtctctttctctcaatgcttattttacttcttgctctccttcggt ccctcctctacgtcttctttttcttctctatcgacttaagaagacgacaaaatgcactaaattcgatttacgggttcccgacggcaaggcgccgccacacaccacacacaaattggctcttctccaaactcaacaagatttgtgtataggtcccttacacgtgttatggtggatgggtagggttctcgtatgacacttaccctttttatgaacatatccagctacagtaatcccgagacctagtgccggatcacgatgtaatgccacgtcaatcaattcaaacttggttgattcccaatt
    Mapping_target: C52A11
    Type_of_mutation: Substitution: C T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain (33)
    Laboratory: AX
    Person: WBPerson6900
    Analysis: WGS_Pasadena_Quinlan
      WGS_De_Bono
      Million_mutation_project_reanalysis
      SNP_Wicks
    History: Acquires_merge: WBVar01376090
        WBVar01244217
        WBVar00243784
    Status: Live
  Affects: Gene: WBGene00003404
    Transcript: C52A11.4b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: C52A11.4b.1:c.1604-178G>A
        Intron_number: 16/19
      C52A11.4c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: C52A11.4c.1:c.1031-178G>A
        Intron_number: 9/35
      C52A11.4f.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: C52A11.4f.1:c.1604-178G>A
        Intron_number: 15/42
      C52A11.4g.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: C52A11.4g.1:c.977-178G>A
        Intron_number: 14/40
      C52A11.4e.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: C52A11.4e.1:c.977-178G>A
        Intron_number: 9/35
      C52A11.4d.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: C52A11.4d.1:c.1691-178G>A
        Intron_number: 16/42
      C52A11.4a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: C52A11.4a.1:c.1604-178G>A
        Intron_number: 16/43
  Reference: WBPaper00004703
    WBPaper00037807
  Method: WGS_Pasadena_Quinlan