WormBase Tree Display for Variation: WBVar00105362
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| WBVar00105362 | Name | Public_name | WBVar00105362 | ||
|---|---|---|---|---|---|
| Other_name (12) | |||||
| HGVSg | CHROMOSOME_II:g.9052556A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | T24B8 | |
| Flanking_sequences | agaattgtttttattctggccattgatgcatcatcccacactgttctcatttcttcggcgacgtcctcttcatcactctccacaaattgatttcgtaccaaatcattgagaggatattttgatttttcgacagaagaagatgcagttattggcgctgaatccagaccactgatctcacgtgtcaaatactgaattgctttttcaacgtcattgttagacaatctcaacgctgtatcaatttcctcggatttgaatctgtaagatgagagacactagaagttagaccaaggaattattttt | aaccccattgtgattagcatatcttgattatcttgatactgttgagatacatcaggaactgccgttgcctcactcgttgattgaacccagagatcgataccttctgtgcagattttctggaaaaaatttgtttttttgaaaagaaaataataattctaaatggagacgctcgttattttccgcagcattggagagaaatatcgttaattacaaggttcgtttgcctctactatttcaatttgctttgaaaaataaatatttcagcaaagacactaatatttaacttgtgggacttgtgag | |||
| Mapping_target | T24B8 | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (33) | |||||
| Laboratory | AX | ||||
| RW | |||||
| Person | WBPerson6900 | ||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| SNP_Wicks | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00174374 | |||
| WBVar01374743 | |||||
| WBVar01242842 | |||||
| WBVar00246406 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00011980 | |||
| Transcript | T24B8.7c.1 | VEP_consequence | splice_region_variant,intron_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | T24B8.7c.1:c.266+4T>C | ||||
| Intron_number | 2/26 | ||||
| T24B8.7b.1 | VEP_consequence | splice_region_variant,intron_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | T24B8.7b.1:c.431+4T>C | ||||
| Intron_number | 4/28 | ||||
| T24B8.7a.1 | VEP_consequence | splice_region_variant,intron_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | T24B8.7a.1:c.431+4T>C | ||||
| Intron_number | 4/29 | ||||
| T24B8.7d.1 | VEP_consequence | splice_region_variant,intron_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | T24B8.7d.1:c.266+4T>C | ||||
| Intron_number | 2/26 | ||||
| T24B8.7f.1 | VEP_consequence | splice_region_variant,intron_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | T24B8.7f.1:c.266+4T>C | ||||
| Intron_number | 2/13 | ||||
| T24B8.7e.1 | VEP_consequence | splice_region_variant,intron_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | T24B8.7e.1:c.266+4T>C | ||||
| Intron_number | 2/14 | ||||
| T24B8.7g.1 | VEP_consequence | splice_region_variant,intron_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | T24B8.7g.1:c.431+4T>C | ||||
| Intron_number | 4/15 | ||||
| T24B8.7h.1 | VEP_consequence | splice_region_variant,intron_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | T24B8.7h.1:c.431+4T>C | ||||
| Intron_number | 4/15 | ||||
| Reference | WBPaper00004703 | ||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
