WormBase Tree Display for Variation: WBVar00105323
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| WBVar00105323 | Name | Public_name | WBVar00105323 | ||
|---|---|---|---|---|---|
| Other_name | pas10182 | ||||
| CE46897:p.Gly225Ter | |||||
| M176.6b.1:c.493G>T | |||||
| CE47000:p.Gly165Ter | |||||
| M176.6a.1:c.673G>T | |||||
| HGVSg | CHROMOSOME_II:g.9432612C>A | ||||
| Sequence_details | SMap | S_parent | Sequence | M176 | |
| Flanking_sequences | tgctaaatactccattccttcagctatttgatatgaaaaagaaagaaggtcagacgtgcaaagtgagtcaagactttcttcaatgacatcatcctcattttcattgaacatatacgtttttcttctgatactttttggcaatagatacccatttttttcgtaaaccaattcatctttgaagatactcttcttctcttcaaggaattttaatagatccccacattcgacgaattctacgatgagtaaatttcgagcactgaaaaaagttatatcgaaagttgagtttctcatctcaccttc | agaatttgcagtaactgcgccaattatagccaaaatgtttgggtttcgtccaatagcacacatcaacttcgtttcgtcctcaatcattttttcttgattttcttgggtgggatcatttgattctttaaaattgtgaactttttttttcaaatttcaaaacttacgtttcacagcaacgcttagcttttgaagagtgtcagtttcagtatttgaagttcgcatactcaataacccataacatacttctccaaagaatcctgatccaagtttatcttctgatatttccagtttagcctgatc | |||
| Mapping_target | M176 | ||||
| Type_of_mutation | Substitution | C | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | ||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00002199 | |||
| Transcript | M176.6b.1 | VEP_consequence | stop_gained | ||
| VEP_impact | HIGH | ||||
| HGVSc | M176.6b.1:c.493G>T | ||||
| HGVSp | CE47000:p.Gly165Ter | ||||
| cDNA_position | 577 | ||||
| CDS_position | 493 | ||||
| Protein_position | 165 | ||||
| Exon_number | 4/10 | ||||
| Codon_change | Gga/Tga | ||||
| Amino_acid_change | G/* | ||||
| M176.6a.1 | VEP_consequence | stop_gained | |||
| VEP_impact | HIGH | ||||
| HGVSc | M176.6a.1:c.673G>T | ||||
| HGVSp | CE46897:p.Gly225Ter | ||||
| cDNA_position | 757 | ||||
| CDS_position | 673 | ||||
| Protein_position | 225 | ||||
| Exon_number | 5/11 | ||||
| Codon_change | Gga/Tga | ||||
| Amino_acid_change | G/* | ||||
| Method | WGS_Pasadena_Quinlan |
