WormBase Tree Display for Variation: WBVar00104702
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| WBVar00104702 | Name | Public_name | WBVar00104702 | ||
|---|---|---|---|---|---|
| Other_name (13) | |||||
| HGVSg | CHROMOSOME_II:g.8721206G>T | ||||
| Sequence_details | SMap | S_parent | Sequence | T01B7 | |
| Flanking_sequences | tttcctagaatgctaaagaaaataactgatctatttcaatcaagtttaggctaaaatttaataattgatggcgttcacatatgtgtgtgtgcctgcgtgtgtttgcgtgttcgatgataagctttcttctgattgtcttcctatgattcatcaattctattgcctccagcctcttcttctttcatacaatttttcactgaaagtttcatagctctcggaaaatgcctacgacgaaaattgtagtcacatatcacatattgataagcagacgtttttcatatttctctatttctattcaat | atataaagtggtctgcagcatgtttgattattaatttttttttttctaaattgaattatcttggctttgaactgattaaaaaatgcattttctattttctttacaatcgatcgttttgttatagtcctcgtgtgaattctaaaaatgttcgttcatcagaaattatagatgacctttgtttattttgtgtcttctatgaaaaaaaaaagagcctatcatccaaaacttctgatatcaacggttgaaaattaatttttatcaattttctcaacattgcattaccttttcaaccaatttaat | |||
| Mapping_target | T01B7 | ||||
| Type_of_mutation | Substitution | G | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (37) | |||||
| Laboratory | AX | ||||
| RW | |||||
| Person | WBPerson6900 | ||||
| WBPerson4037 | |||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| SNP_Wicks | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar01242527 | |||
| WBVar00245984 | |||||
| WBVar01374435 | |||||
| WBVar01308764 | |||||
| WBVar00551868 | |||||
| WBVar00174138 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00011311 | |||
| Transcript | T01B7.5b.3 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | T01B7.5b.3:c.*6-307G>T | ||||
| Intron_number | 8/8 | ||||
| T01B7.5a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T01B7.5a.1:c.*6-307G>T | ||||
| Intron_number | 11/11 | ||||
| T01B7.5b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T01B7.5b.1:c.*6-307G>T | ||||
| Intron_number | 10/10 | ||||
| T01B7.5b.6 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T01B7.5b.6:c.*6-307G>T | ||||
| Intron_number | 7/7 | ||||
| T01B7.5b.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T01B7.5b.2:c.*6-307G>T | ||||
| Intron_number | 10/10 | ||||
| T01B7.5b.5 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T01B7.5b.5:c.*1130G>T | ||||
| cDNA_position | 1821 | ||||
| Exon_number | 7/7 | ||||
| T01B7.5a.2 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T01B7.5a.2:c.*1130G>T | ||||
| cDNA_position | 2371 | ||||
| Exon_number | 11/11 | ||||
| T01B7.5b.4 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T01B7.5b.4:c.*6-307G>T | ||||
| Intron_number | 9/9 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00004703 | |||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
