WormBase Tree Display for Variation: WBVar00104394
expand all nodes | collapse all nodes | view schema
| WBVar00104394 | Name | Public_name | WBVar00104394 | ||
|---|---|---|---|---|---|
| Other_name | pas9253 | ||||
| haw26253 | |||||
| haw131282 | |||||
| oicr_ce755 | |||||
| oicr_ce754 | |||||
| oicr_ce753 | |||||
| cewivar00091300 | |||||
| CE23545:p.Gly412= | |||||
| C15F1.2.1:c.1236T>C | |||||
| HGVSg | CHROMOSOME_II:g.6986683T>C | ||||
| Sequence_details | SMap | S_parent | Sequence | C15F1 | |
| Flanking_sequences | tgcaaaagaaggatttgattcattgattgatgcagctactgtttctgaaacaattaataatatgccaccaatgggaactgttactttattacaatcaaatgatgataatattgttgttgaagattctggtgacaaaacttcaatttcatcatcaatcgtatttggatcctcatcggaatctgtcactacaagtcctatcatttttgtcgaaaaaatcgcacttccacagatgaaccaaactattgaaaaatgtagagtttctacgactattcgattttccaatattctgaaaatcttggg | gaaaatccaaattcgaaagatttcaaggaagtgaagggacttgtggaaagatttgaacaaagattaaaaggaaaagaattggatgatgaacagaagaataaggcgaaattggtttgaaattgtagagtgaacaatctagtaaatgtgagttttcagattgagaaggcacttgaaatgctactggaaaactttgatgacaccgattataaaaaagttgaaagagacgttgaaaaagttgtaaatgaaactcgagatctcccaatttgccaagaaaccgaagaatcaatgaatagtacagtt | |||
| Mapping_target | C15F1 | ||||
| Type_of_mutation | Substitution | T | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (32) | |||||
| Laboratory | AX | ||||
| RW | |||||
| Person | WBPerson6900 | ||||
| WBPerson4037 | |||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| WGS_Stein | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar01307340 | |||
| WBVar00551147 | |||||
| WBVar00602336 | |||||
| WBVar01373003 | |||||
| WBVar00602334 | |||||
| WBVar00173003 | |||||
| WBVar01240963 | |||||
| WBVar00602335 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00015795 | |||
| Transcript | C15F1.2.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | C15F1.2.1:c.1236T>C | ||||
| HGVSp | CE23545:p.Gly412= | ||||
| cDNA_position | 1289 | ||||
| CDS_position | 1236 | ||||
| Protein_position | 412 | ||||
| Exon_number | 6/14 | ||||
| Codon_change | ggT/ggC | ||||
| Amino_acid_change | G | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
