WormBase Tree Display for Variation: WBVar00103585
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| WBVar00103585 | Name | Public_name | WBVar00103585 | ||
|---|---|---|---|---|---|
| Other_name | pas8444 | ||||
| snp_T12C9[1] | |||||
| haw24669 | |||||
| haw130256 | |||||
| cewivar00013162 | |||||
| T12C9.3c.1:c.2835-310T>G | |||||
| T12C9.3d.1:c.3486-310T>G | |||||
| T12C9.3b.1:c.3048-310T>G | |||||
| T12C9.3a.1:c.3699-310T>G | |||||
| HGVSg | CHROMOSOME_II:g.4443421A>C | ||||
| Sequence_details | SMap | S_parent | Sequence | T12C9 | |
| Flanking_sequences | aatataatataatttttccgtcaaaatcatccccagaacgttctcaaactgtagaagtattcacttcaaaccacataaaacaggaacacaattttaaattttttagatttttggagcctctgaagaaaaattgtcagaaaaatcaaaacaattgaaaaaaaagttcgttgatttataaaaaaacataaacaaatatttcgtgtgtgtgtgttgaacatgtttgataagcgaaagaaggacgattcggagagaatgtgcatagtagaaagacgattgagagagaaggaaaagaaattagag | tttttttggattttggattctgaaaagattagagcttgagtttgaaccaaaaaccttgcacacaggtataaaaacgcctacctgcgtacctacagaaatactaataaaaaacaagaggctcaaaatacaaaaaactcaaaaatctacaattttttacaaaaaaatcccacctcttggtaggcacggaaaaatccaagccgcatattccctaatccaaaacccaaaaaaaaattcctacgaaaaaccaaaaatttcagaatgccgacaaaaaagacactaggtggacatttgagagaagta | |||
| Mapping_target | T12C9 | ||||
| Type_of_mutation | Substitution | A | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (38) | |||||
| Laboratory | AX | ||||
| RW | |||||
| Person | WBPerson6900 | ||||
| WBPerson4037 | |||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| SNP_Wicks | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00246222 | |||
| WBVar01305573 | |||||
| WBVar01239194 | |||||
| WBVar01370961 | |||||
| WBVar00550121 | |||||
| WBVar00171419 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00006657 | |||
| Transcript | T12C9.3c.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | T12C9.3c.1:c.2835-310T>G | ||||
| Intron_number | 19/23 | ||||
| T12C9.3d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T12C9.3d.1:c.3486-310T>G | ||||
| Intron_number | 19/23 | ||||
| T12C9.3b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T12C9.3b.1:c.3048-310T>G | ||||
| Intron_number | 20/24 | ||||
| T12C9.3a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T12C9.3a.1:c.3699-310T>G | ||||
| Intron_number | 20/25 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00004703 | |||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
