WormBase Tree Display for Variation: WBVar00103450
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WBVar00103450 | Name | Public_name | WBVar00103450 | ||
---|---|---|---|---|---|
Other_name | pas8309 | ||||
uCE3-1424 | |||||
cewivar00030205 | |||||
W06F12.1d.1:c.93A>C | |||||
W06F12.1d.2:c.93A>C | |||||
CE37160:p.Thr31= | |||||
CE29476:p.Thr64= | |||||
W06F12.1d.3:c.93A>C | |||||
W06F12.1a.1:c.192A>C | |||||
HGVSg | CHROMOSOME_III:g.13714609A>C | ||||
Sequence_details | SMap | S_parent | Sequence | W06F12 | |
Flanking_sequences | taaaccatttttggtttttttgttggaaatttttttgttggcttgataaatttggcacaatttcgttttccgagaggagaacaacttttatttccttcttcatctatttcctcctttttttcagaattctctagaaaaaaaacaaaaaaaaaagaaggcgtcctctctcgtcatgaatgaataacactagttccgcctcactttttcatgttcttttttcttctttcttttttctttctttttttcaagtccagaaattccaggatcaagcagttcatccggctgtagttcgtcatctac | gagctctacgatcttgcagctgcacacgccgcacttatatcccgacagcaacagattctcagtcagggtgtgtttttgtggaaaaattaaaacaaattgagttttacatgtccggaaatgtgtgtctcgccacgaactttgtggaattcgttgggagaccctattgttttttttaataagctaagaaattgagattttcgctcattcatgtgaaaaaaataacgctcgctaatctttgtattagaattagagttgatttgcttttataatccagttcaatttgtctacaaattttctttt | |||
Mapping_target | W06F12 | ||||
Type_of_mutation | Substitution | A | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (21) | |||||
Laboratory | AX | ||||
Person | WBPerson6900 | ||||
Analysis | WGS_Pasadena_Quinlan | ||||
WGS_De_Bono | |||||
Million_mutation_project_reanalysis | |||||
SNP_Swan | |||||
History | Acquires_merge | WBVar01274412 | |||
WBVar00270207 | |||||
Status | Live | ||||
Affects | Gene | WBGene00003048 | |||
Transcript | W06F12.1a.1 | VEP_consequence | synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | W06F12.1a.1:c.192A>C | ||||
HGVSp | CE29476:p.Thr64= | ||||
cDNA_position | 192 | ||||
CDS_position | 192 | ||||
Protein_position | 64 | ||||
Exon_number | 2/11 | ||||
Codon_change | acA/acC | ||||
Amino_acid_change | T | ||||
W06F12.1d.2 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | W06F12.1d.2:c.93A>C | ||||
HGVSp | CE37160:p.Thr31= | ||||
cDNA_position | 179 | ||||
CDS_position | 93 | ||||
Protein_position | 31 | ||||
Exon_number | 4/13 | ||||
Codon_change | acA/acC | ||||
Amino_acid_change | T | ||||
W06F12.1d.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | W06F12.1d.1:c.93A>C | ||||
HGVSp | CE37160:p.Thr31= | ||||
cDNA_position | 217 | ||||
CDS_position | 93 | ||||
Protein_position | 31 | ||||
Exon_number | 4/13 | ||||
Codon_change | acA/acC | ||||
Amino_acid_change | T | ||||
W06F12.1d.3 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | W06F12.1d.3:c.93A>C | ||||
HGVSp | CE37160:p.Thr31= | ||||
cDNA_position | 144 | ||||
CDS_position | 93 | ||||
Protein_position | 31 | ||||
Exon_number | 3/12 | ||||
Codon_change | acA/acC | ||||
Amino_acid_change | T | ||||
Reference | WBPaper00037807 | ||||
WBPaper00005369 | |||||
Method | WGS_Pasadena_Quinlan |