WormBase Tree Display for Variation: WBVar00102801
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| WBVar00102801 | Evidence | Paper_evidence | WBPaper00040707 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00102801 | |||
| Other_name | pas7660 | ||||
| cewivar00088378 | |||||
| CE25336:p.Gln172= | |||||
| Y49F6B.2.1:c.516A>G | |||||
| HGVSg | CHROMOSOME_II:g.3503645A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | Y49F6B | |
| Flanking_sequences | agtttgaaggcgatcatcagcctcaaaataggcttttaggccggaatgcggccgccaggctgaagaaagtgcgttgaaatcgatgaaaattcgattaaaatcgctcaaaatccaataaaaatcgctatttttccagtcagaacgcgaaaaaaccaaaggatccgcttggttcaaccttccagcgacggagctcaccgatgagcacaaacgagatttggaattccttcaaatgagatcaactctcgatccattggctcattatcgtcgaaatgaccgggctgtactgccgaaatacttcca | gttcgagaaaatttaaaaaattcccaaaaaatccgagatttttcaggttggacgagtcgttgacgctccagaagacttttattcgagtagaatggtgcgaaaagagcgaaaaaagacgatggtcgacgagattttgcataatgaggaatcgttgagcaaagccaagaaaaagtacgggaaaatcaagaatttttgtgaaaaaattcaagtttttgcgtttttaacgttaaaatcgtgatttttagagcaaaaatgagctaaaaaggataaaaattggccgattttcacccaaaacggcga | |||
| Mapping_target | Y49F6B | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (55) | |||||
| Laboratory | QX | ||||
| Person | WBPerson6900 | ||||
| WBPerson1730 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01437038 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00021715 | |||
| Transcript | Y49F6B.2.1 | VEP_consequence | splice_region_variant,synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | Y49F6B.2.1:c.516A>G | ||||
| HGVSp | CE25336:p.Gln172= | ||||
| cDNA_position | 522 | ||||
| CDS_position | 516 | ||||
| Protein_position | 172 | ||||
| Exon_number | 4/7 | ||||
| Codon_change | caA/caG | ||||
| Amino_acid_change | Q | ||||
| Reference | WBPaper00040707 | ||||
| Method | WGS_Pasadena_Quinlan |
