WormBase Tree Display for Variation: WBVar00102798
expand all nodes | collapse all nodes | view schema
| WBVar00102798 | Name | Public_name | WBVar00102798 | ||
|---|---|---|---|---|---|
| Other_name | pas7657 | ||||
| cewivar00088366 | |||||
| CE25336:p.Pro39= | |||||
| Y49F6B.2.1:c.117T>A | |||||
| HGVSg | CHROMOSOME_II:g.3503178T>A | ||||
| Sequence_details | SMap | S_parent | Sequence | Y49F6B | |
| Flanking_sequences | ttatttcgaaggttttcaccgggttttcgtcggttttcgctctttttcgccagttttttcgaataaaaattgaaattgaatgattttcagctcaaaatgtctgcgctctacttcaaaaagctacgaaaacagcagaatcccgacgtttcaagcagcgaagattcggattccgacgaggaaattccaaaaaagaagcaaaagcaacaagtaatcacaaaaaacggcgatttttgcaaatttttagcgaaaaaaaccgaaaatttcccagaaaagcaccaaaaaaatcgattttcagaagcc | gtcgccgaggaattcgatgatttcgtcgttgacagagccgtacgtgaagaagcgccaaaagaaggagcttttgaggcagttgacctgctcggaacatcctatttggagccatatgagatggataaggacttgcaggagcttctggaaaagtcagttgtcgggccgaagtttgaaggcgatcatcagcctcaaaataggcttttaggccggaatgcggccgccaggctgaagaaagtgcgttgaaatcgatgaaaattcgattaaaatcgctcaaaatccaataaaaatcgctatttttcc | |||
| Mapping_target | Y49F6B | ||||
| Type_of_mutation | Substitution | T | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
| WBStrain00006637 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00008273 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022868 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023665 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00031113 | From_analysis | Million_mutation_project_reanalysis | |||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00021715 | |||
| Transcript | Y49F6B.2.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | Y49F6B.2.1:c.117T>A | ||||
| HGVSp | CE25336:p.Pro39= | ||||
| cDNA_position | 123 | ||||
| CDS_position | 117 | ||||
| Protein_position | 39 | ||||
| Exon_number | 3/7 | ||||
| Codon_change | ccT/ccA | ||||
| Amino_acid_change | P | ||||
| Method | WGS_Pasadena_Quinlan |
