WormBase Tree Display for Variation: WBVar00101571
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| WBVar00101571 | Name | Public_name | WBVar00101571 | ||
|---|---|---|---|---|---|
| Other_name | pas6430 | ||||
| haw11576 | |||||
| haw120386 | |||||
| cewivar00075492 | |||||
| F58D5.2b.2:c.-55+93A>T | |||||
| F58D5.2a.1:c.325-251A>T | |||||
| F58D5.2b.3:c.-245A>T | |||||
| F58D5.2b.1:c.-54-251A>T | |||||
| HGVSg | CHROMOSOME_I:g.12066581T>A | ||||
| Sequence_details | SMap | S_parent | Sequence | F58D5 | |
| Flanking_sequences | atggcagacacaaggaggcccaccgaaacgagcacatacagaagagcttcctgaaaaataaagaaaaactattttttatttgcatttagaatagggaaatcgaattttaccttaaaaaattaaacaattcgaaaacccaaggttgtgctctgaggagaaaatgcgggttttccgacttttttcagagaaaaattcaaattctacacattttaaatgcattctatcacaaaattgaagtaatttacatttaaatgtaagtttatatataaaaatgcgaatttttcgccaaattctcatcag | gcgcaagtgcagggtagtgcaattgtgctctgccaagaatatttgattttctcacagtttctagtgtttttttttgtagaaaaaaaggttactgaggaagtgtcagttcacatctcgaactatcttggcttgatctttctgaccggttcaacgttctttttgttgaaccaggcttattctttttagggaataaacccactgcctgacccgcctgggttttgcagaagcaccgagcccgattcaatacaccataaaaaaggttttaggtcaggcagcgacctttattgtaagaaagatgaa | |||
| Mapping_target | F58D5 | ||||
| Type_of_mutation | Substitution | T | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (26) | |||||
| Laboratory | AX | ||||
| RW | |||||
| Person | WBPerson6900 | ||||
| WBPerson4037 | |||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar01350784 | |||
| WBVar01425194 | |||||
| WBVar00158326 | |||||
| WBVar00540251 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00010242 | |||
| Transcript | F58D5.2b.2 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F58D5.2b.2:c.-55+93A>T | ||||
| Intron_number | 1/4 | ||||
| F58D5.2b.3 | VEP_consequence | 5_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F58D5.2b.3:c.-245A>T | ||||
| cDNA_position | 287 | ||||
| Exon_number | 1/5 | ||||
| F58D5.2b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F58D5.2b.1:c.-54-251A>T | ||||
| Intron_number | 1/4 | ||||
| F58D5.2a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F58D5.2a.1:c.325-251A>T | ||||
| Intron_number | 3/5 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
