WormBase Tree Display for Variation: WBVar00098690
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| WBVar00098690 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00098690 | |||
| Other_name (14) | |||||
| HGVSg | CHROMOSOME_III:g.3001252A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | Y55D5A | |
| Flanking_sequences | tgagattctcagtcgacgctggatcatctacattaatcttaatagcacacggtccgaaacgatcacccatcagagaaacaacattatttccagttcctaggtacacttttccgaatgatccctctccacactgttgtccgagcacaacatcatcctgccgtagctcccaatcgtctgcattgtacttattgtccacacaatattcgggattcaattgcataaagtcagatagagctttcacttttttgccgtagcgtacttgaatgtagtagtagattatacaaccggcaattgacatta | aatcaaaaagacgagaagcatgccgagaatgatttccacagtgaagaagcctggcgtcatgacgacgattgggtcggaggattcggcttccggtccagcgccgtgtacagaggtcgccgttactgagacactgcaaattcggagggttttagtggaaaaaactcgaaaaattccgatttttccaattttcgatatatttctttcggaaaaaaaattgaaatttgaaattttttaaaaataatttcagaatctctttattcagaaattcaaattttcaaaatatttagaattttttgaaat | |||
| Mapping_target | Y55D5A | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (27) | |||||
| Laboratory | AX | ||||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01260934 | |||
| WBVar01329459 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00000898 | |||
| Transcript | Y55D5A.5g.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | Y55D5A.5g.1:c.61T>C | ||||
| HGVSp | CE50631:p.Leu21= | ||||
| cDNA_position | 61 | ||||
| CDS_position | 61 | ||||
| Protein_position | 21 | ||||
| Exon_number | 1/4 | ||||
| Codon_change | Tta/Cta | ||||
| Amino_acid_change | L | ||||
| Y55D5A.5e.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y55D5A.5e.1:c.3355T>C | ||||
| HGVSp | CE50158:p.Leu1119= | ||||
| cDNA_position | 3355 | ||||
| CDS_position | 3355 | ||||
| Protein_position | 1119 | ||||
| Exon_number | 12/15 | ||||
| Codon_change | Tta/Cta | ||||
| Amino_acid_change | L | ||||
| Y55D5A.5f.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y55D5A.5f.1:c.1153T>C | ||||
| HGVSp | CE50215:p.Leu385= | ||||
| cDNA_position | 1153 | ||||
| CDS_position | 1153 | ||||
| Protein_position | 385 | ||||
| Exon_number | 5/8 | ||||
| Codon_change | Tta/Cta | ||||
| Amino_acid_change | L | ||||
| Y55D5A.5a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y55D5A.5a.1:c.3583T>C | ||||
| HGVSp | CE46852:p.Leu1195= | ||||
| cDNA_position | 3681 | ||||
| CDS_position | 3583 | ||||
| Protein_position | 1195 | ||||
| Exon_number | 15/19 | ||||
| Codon_change | Tta/Cta | ||||
| Amino_acid_change | L | ||||
| Y55D5A.5c.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y55D5A.5c.1:c.3829T>C | ||||
| HGVSp | CE50204:p.Leu1277= | ||||
| cDNA_position | 3992 | ||||
| CDS_position | 3829 | ||||
| Protein_position | 1277 | ||||
| Exon_number | 17/21 | ||||
| Codon_change | Tta/Cta | ||||
| Amino_acid_change | L | ||||
| Y55D5A.5d.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y55D5A.5d.1:c.3442T>C | ||||
| HGVSp | CE50312:p.Leu1148= | ||||
| cDNA_position | 3442 | ||||
| CDS_position | 3442 | ||||
| Protein_position | 1148 | ||||
| Exon_number | 13/16 | ||||
| Codon_change | Tta/Cta | ||||
| Amino_acid_change | L | ||||
| Reference | WBPaper00037807 | ||||
| Method | WGS_Pasadena_Quinlan |
