WormBase Tree Display for Variation: WBVar00093213

WBVar00093213 Name: Public_name: ok2023
    Other_name: F52G2.1a.1:c.74_460-255del
      F52G2.1b.1:c.122_508-255del
    HGVSg: CHROMOSOME_IV:g.13519066_13520668del
  Sequence_details: SMap: S_parent: Sequence: F52G2
    Flanking_sequences: catacatttttccccctattcatgtgtaga gtttttgtacacttgatggcggctcttctg
    Mapping_target: F52G2
    Type_of_mutation: Deletion
    PCR_product: OK2023_external
      OK2023_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00032335
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00003582
    Transcript: F52G2.1c.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1/5
        Exon_number: 1/6
      F52G2.1b.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F52G2.1b.1:c.122_508-255del
        cDNA_position: 122-?
        CDS_position: 122-?
        Protein_position: 41-?
        Intron_number: 1/6
        Exon_number: 1/7
      F52G2.1a.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F52G2.1a.1:c.74_460-255del
        cDNA_position: 104-?
        CDS_position: 74-?
        Protein_position: 25-?
        Intron_number: 3/8
        Exon_number: 3/9
  Isolation: Mutagen: UV/TMP
  Description: Phenotype: WBPhenotype:0000154 Paper_evidence: WBPaper00047010
        Curator_confirmed: WBPerson557
      WBPhenotype:0000848 Paper_evidence: WBPaper00045542
        Curator_confirmed: WBPerson1724
      WBPhenotype:0001015 Paper_evidence: WBPaper00045542
        Curator_confirmed: WBPerson1724
  Reference: WBPaper00045542
    WBPaper00047010
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele