WormBase Tree Display for Variation: WBVar00091962

WBVar00091962 Name: Public_name: ok678
    Other_name: E02H4.3c.2:c.608_*187del
      E02H4.3c.1:c.608_*187del
      E02H4.3a.1:c.2444_*187del
      E02H4.3d.1:c.1562_*187del
      E02H4.3f.2:c.599_*187del
      E02H4.3f.3:c.599_*187del
      E02H4.3f.4:c.599_*187del
      E02H4.3b.1:c.1571_*187del
      E02H4.3f.1:c.599_*187del
    HGVSg: CHROMOSOME_X:g.14285289_14286132del
  Sequence_details: SMap: S_parent: Sequence: E02H4
    Flanking_sequences: acaatattgcttgataaacaacaagttgca cgtaggctgcgtcagctgaagtgttcaccc
    Mapping_target: E02H4
    Type_of_mutation: Deletion
    PCR_product: ok678_external
      ok678_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00035873
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00006517
    Transcript: E02H4.3f.4 VEP_consequence: splice_acceptor_variant,splice_donor_variant,stop_lost,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: E02H4.3f.4:c.599_*187del
        cDNA_position: 613-1020
        CDS_position: 599-?
        Protein_position: 200-?
        Intron_number: 6-7/8
        Exon_number: 6-9/9
      E02H4.3a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,stop_lost,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: E02H4.3a.1:c.2444_*187del
        cDNA_position: 4075-4482
        CDS_position: 2444-?
        Protein_position: 815-?
        Intron_number: 9-10/11
        Exon_number: 9-12/12
      E02H4.3d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,stop_lost,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: E02H4.3d.1:c.1562_*187del
        cDNA_position: 1564-1971
        CDS_position: 1562-?
        Protein_position: 521-?
        Intron_number: 11-12/13
        Exon_number: 11-14/14
      E02H4.3f.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,stop_lost,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: E02H4.3f.1:c.599_*187del
        cDNA_position: 1620-2027
        CDS_position: 599-?
        Protein_position: 200-?
        Intron_number: 10-11/12
        Exon_number: 10-13/13
      E02H4.3e.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 2453-?
        CDS_position: 2453-?
        Protein_position: 818-?
        Intron_number: 8-9/9
        Exon_number: 8-10/10
      E02H4.3f.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,stop_lost,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: E02H4.3f.2:c.599_*187del
        cDNA_position: 996-1403
        CDS_position: 599-?
        Protein_position: 200-?
        Intron_number: 9-10/11
        Exon_number: 9-12/12
      E02H4.3b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,stop_lost,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: E02H4.3b.1:c.1571_*187del
        cDNA_position: 1573-1980
        CDS_position: 1571-?
        Protein_position: 524-?
        Intron_number: 11-12/13
        Exon_number: 11-14/14
      E02H4.3f.3 VEP_consequence: splice_acceptor_variant,splice_donor_variant,stop_lost,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: E02H4.3f.3:c.599_*187del
        cDNA_position: 910-1317
        CDS_position: 599-?
        Protein_position: 200-?
        Intron_number: 8-9/10
        Exon_number: 8-11/11
      E02H4.3c.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,stop_lost,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: E02H4.3c.2:c.608_*187del
        cDNA_position: 918-1325
        CDS_position: 608-?
        Protein_position: 203-?
        Intron_number: 8-9/10
        Exon_number: 8-11/11
      E02H4.3c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,stop_lost,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: E02H4.3c.1:c.608_*187del
        cDNA_position: 1363-1770
        CDS_position: 608-?
        Protein_position: 203-?
        Intron_number: 9-10/11
        Exon_number: 9-12/12
  Isolation: Mutagen: UV/TMP
  Genetics: Mapping_data: In_multi_point: 5538
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele