WormBase Tree Display for Variation: WBVar00091509

WBVar00091509 Evidence: Paper_evidence: WBPaper00039866
  Name: Public_name: ok200
    HGVSg: CHROMOSOME_IV:g.11800544_11801794del
  Sequence_details: SMap: S_parent: Sequence: H01G02
    Flanking_sequences: aaactcacttttgaaacattcgggaccatt gatgaagatcatggaacgttgcaatcaatt
    Mapping_target: H01G02
    Type_of_mutation: Deletion
    PCR_product: OK200_external
      OK200_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00007240
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00045108
      WBGene00010349
    Transcript: H01G02.4.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 886-?
        Intron_number: 6/6
        Exon_number: 6-7/7
      H01G02.4.1 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 886-?
        Exon_number: 6/6
      H01G02.2.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-206
        CDS_position: ?-116
        Protein_position: ?-39
        Intron_number: 2/8
        Exon_number: 1-3/9
    Interactor: WBInteraction000563598
      WBInteraction000579025
      WBInteraction000579026
  Isolation: Mutagen: UV/TMP
  Description: Phenotype (7)
  Reference: WBPaper00039866
    WBPaper00054177
    WBPaper00056552
    WBPaper00065813
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele