WormBase Tree Display for Variation: WBVar00091283

WBVar00091283 Evidence: Paper_evidence: WBPaper00035166
  Name: Public_name: nj48
    Other_name: C18F3.2b.1:c.598-368_742+55del
      C18F3.2c.1:c.598-368_742+55del
    HGVSg: CHROMOSOME_IV:g.8066849_8067416del
  Sequence_details: SMap: S_parent: Sequence: C18F3
    Flanking_sequences: acatagaaatacacacaaatacgagtgctg ttttaattattccaaaaaaaaatccagaca
    Mapping_target: C18F3
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00021998
    Laboratory: IK
    Status: Live
  Affects: Gene: WBGene00004732
    Transcript: C18F3.2a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 2-3/15
        Exon_number: 1-3/16
      C18F3.2c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C18F3.2c.1:c.598-368_742+55del
        Intron_number: 5-6/18
        Exon_number: 6/19
      C18F3.2b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C18F3.2b.1:c.598-368_742+55del
        Intron_number: 5-6/18
        Exon_number: 6/19
      C18F3.2d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1-2/13
        Exon_number: 1-2/14
    Interactor: WBInteraction000524604
  Genetics: Interpolated_map_position: IV 3.59085
  Description: Phenotype: WBPhenotype:0000632 Paper_evidence: WBPaper00053043
          WBPaper00056066
        Curator_confirmed: WBPerson35337
          WBPerson18979
        EQ_annotations: GO_term: GO:0030424 PATO:0000460 Paper_evidence: WBPaper00056066
                Curator_confirmed: WBPerson18979
      WBPhenotype:0000882 Paper_evidence: WBPaper00056066
          WBPaper00044291
          WBPaper00055911
        Curator_confirmed: WBPerson18979
          WBPerson14810
        Remark: Posterior PVD 1° dendrite branch underdeveloped Paper_evidence: WBPaper00056066
            Curator_confirmed: WBPerson18979
        EQ_annotations: GO_term: GO:0044307 PATO:0001501 Paper_evidence: WBPaper00056066
                Curator_confirmed: WBPerson18979
            GO:0016358 PATO:0000460 Paper_evidence: WBPaper00044291
                Curator_confirmed: WBPerson18979
      WBPhenotype:0000905 Paper_evidence: WBPaper00031092
        Curator_confirmed: WBPerson1725
        EQ_annotations: Anatomy_term: WBbt:0003679 PATO:0000460 Paper_evidence: WBPaper00031092
                Curator_confirmed: WBPerson1725
      WBPhenotype:0001333 Paper_evidence: WBPaper00031092
        Curator_confirmed: WBPerson1725
        EQ_annotations: GO_term: GO:0043025 PATO:0000460 Paper_evidence: WBPaper00031092
                Curator_confirmed: WBPerson1725
      WBPhenotype:0001503 Paper_evidence: WBPaper00035166
        Curator_confirmed: WBPerson712
        Remark: Neuroanatomical analysis of ventral nerve cord architecture in these mutants demonstrate a post-developemental axon flip-over phenotype involving PVQL axons. Paper_evidence: WBPaper00035166
            Curator_confirmed: WBPerson712
        EQ_annotations: Anatomy_term: WBbt:0004076 PATO:0000460 Paper_evidence: WBPaper00035166
                Curator_confirmed: WBPerson712
  Reference: WBPaper00035166
    WBPaper00031092
    WBPaper00025149
    WBPaper00044291
    WBPaper00049508
    WBPaper00053043
    WBPaper00055911
    WBPaper00056066
  Method: Deletion_allele