WormBase Tree Display for Variation: WBVar00090900
expand all nodes | collapse all nodes | view schema
| WBVar00090900 | Evidence | Paper_evidence | WBPaper00032201 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Name | Public_name | n4894 | |||||||
| HGVSg | CHROMOSOME_IV:g.17191204_17192149del | ||||||||
| Sequence_details | SMap | S_parent | Sequence | C52D10 | |||||
| Flanking_sequences | cgagacatttttttgctgctacgaaaaatt | atttgacaagaaagcacgggaaacttagag | |||||||
| Mapping_target | C52D10 | ||||||||
| Type_of_mutation | Deletion | ||||||||
| SeqStatus | Sequenced | ||||||||
| Variation_type | Allele | ||||||||
| Origin | Species | Caenorhabditis elegans | |||||||
| Strain | WBStrain00027535 | ||||||||
| Laboratory | MT | ||||||||
| Status | Live | ||||||||
| Affects | Gene | WBGene00001460 | |||||||
| WBGene00171842 | |||||||||
| WBGene00170510 | |||||||||
| WBGene00047812 | |||||||||
| Transcript | C52D10.95 | ||||||||
| C52D10.11.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||||||
| VEP_impact | HIGH | ||||||||
| Intron_number | 1/3 | ||||||||
| Exon_number | 1/4 | ||||||||
| C52D10.105 | |||||||||
| C52D10.31 | |||||||||
| Genetics | Interpolated_map_position | IV | 16.2494 | ||||||
| Description | Phenotype | WBPhenotype:0000131 | Paper_evidence | WBPaper00053388 | |||||
| Curator_confirmed | WBPerson46589 | ||||||||
| Remark | Figure 5C, decreased dauer entry in flp mutants | Paper_evidence | WBPaper00053388 | ||||||
| Curator_confirmed | WBPerson46589 | ||||||||
| Phenotype_assay | Strain | WBStrain00027535 | Paper_evidence | WBPaper00053388 | |||||
| Curator_confirmed | WBPerson46589 | ||||||||
| Control_strain | WBStrain00000001 | Paper_evidence | WBPaper00053388 | ||||||
| Curator_confirmed | WBPerson46589 | ||||||||
| Treatment | Animals were exposed to crude pheremone to induce entry into the dauer larva state | Paper_evidence | WBPaper00053388 | ||||||
| Curator_confirmed | WBPerson46589 | ||||||||
| WBPhenotype:0001183 | Paper_evidence | WBPaper00053887 | |||||||
| Curator_confirmed | WBPerson37651 | ||||||||
| Remark | Figure 5A,G,H | Paper_evidence | WBPaper00053887 | ||||||
| Curator_confirmed | WBPerson37651 | ||||||||
| Phenotype_assay | Control_strain | WBStrain00000001 | Paper_evidence | WBPaper00053887 | |||||
| Curator_confirmed | WBPerson37651 | ||||||||
| WBPhenotype:0001818 | Paper_evidence | WBPaper00053887 | |||||||
| Curator_confirmed | WBPerson37651 | ||||||||
| Remark | (Figure 7) URX activation reduced | Paper_evidence | WBPaper00053887 | ||||||
| Curator_confirmed | WBPerson37651 | ||||||||
| EQ_annotations | Anatomy_term | WBbt:0006846 | PATO:0000460 | Paper_evidence | WBPaper00053887 | ||||
| Curator_confirmed | WBPerson37651 | ||||||||
| GO_term | GO:1904457 | PATO:0000460 | Paper_evidence | WBPaper00053887 | |||||
| Curator_confirmed | WBPerson37651 | ||||||||
| Phenotype_assay | Control_strain | WBStrain00000001 | Paper_evidence | WBPaper00053887 | |||||
| Curator_confirmed | WBPerson37651 | ||||||||
| Phenotype_not_observed | WBPhenotype:0000640 | Paper_evidence | WBPaper00032201 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Remark | Egg-laying was not grossly affected. | Paper_evidence | WBPaper00032201 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Variation_effect | Hypermorph_gain_of_function | Paper_evidence | WBPaper00032201 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Reference | WBPaper00032201 | ||||||||
| WBPaper00053887 | |||||||||
| WBPaper00053388 | |||||||||
| Method | Deletion_allele |
