WormBase Tree Display for Variation: WBVar00090890

WBVar00090890 Evidence: Paper_evidence: WBPaper00031335
  Name: Public_name: n4640
    Other_name: Y67D8A.2a.1:c.1623+964_1623+1748del
      Y67D8A.2b.1:c.1623+964_1623+1748del
    HGVSg: CHROMOSOME_IV:g.3232567_3233351del
  Sequence_details: SMap: S_parent: Sequence: Y67D8A
    Flanking_sequences: CCGGCCAAATCTAGAACTGC ACCTCTGATAATACGGAACGG
    Mapping_target: Y67D8A
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00007202
      WBStrain00007203
      WBStrain00007204
      WBStrain00007205
      WBStrain00007209
      WBStrain00027508
      WBStrain00027525
      WBStrain00027592
      WBStrain00027593
    Laboratory: MT
    Status: Live
  Affects: Gene: WBGene00196015
      WBGene00022059
      WBGene00003286
    Transcript: Y67D8A.6 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      Y67D8A.4
      Y67D8A.2b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y67D8A.2b.1:c.1623+964_1623+1748del
        Intron_number: 9/21
      Y67D8A.2a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y67D8A.2a.1:c.1623+964_1623+1748del
        Intron_number: 9/20
    Interactor: WBInteraction000525170
      WBInteraction000534842
      WBInteraction000534843
      WBInteraction000534844
      WBInteraction000534845
      WBInteraction000534846
      WBInteraction000542495
  Isolation: Mutagen: EMS Paper_evidence: WBPaper00031335
  Genetics: Interpolated_map_position: IV -5.44319
  Description: Phenotype: WBPhenotype:0001171 Paper_evidence: WBPaper00054795
        Curator_confirmed: WBPerson143
    Phenotype_not_observed: WBPhenotype:0000006 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: non-Egl Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
      WBPhenotype:0000207 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: Defecation cycle is normal Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
      WBPhenotype:0000545 Paper_evidence: WBPaper00035664
        Curator_confirmed: WBPerson2021
        Remark: Mutants do not lay late-stage embryos Paper_evidence: WBPaper00035664
            Curator_confirmed: WBPerson2021
      WBPhenotype:0000634 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: Pumping is normal Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
      WBPhenotype:0000637 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: No defects in dauer formation Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
      WBPhenotype:0000643 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: non-Unc Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
      WBPhenotype:0001233 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: Cell number and nuclear staining is normal Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Phenotype_assay: Treatment: DAPI staining Paper_evidence: WBPaper00031335
              Curator_confirmed: WBPerson2021
      WBPhenotype:0002535 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: non-Dyf Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        EQ_annotations: Anatomy_term: WBbt:0005666 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0005667 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0005668 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0005665 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0005661 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0007807 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0007808 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
        Phenotype_assay: Treatment: DiO staining Paper_evidence: WBPaper00031335
              Curator_confirmed: WBPerson2021
  Reference: WBPaper00031335
    WBPaper00035664
    WBPaper00054795
  Method: Deletion_allele