WormBase Tree Display for Variation: WBVar00090771

WBVar00090771 Evidence: Paper_evidence: WBPaper00005540
  Name: Public_name: n3789
    HGVSg: CHROMOSOME_II:g.7010508_7012356del
  Sequence_details: SMap: S_parent: Sequence: C52E12
    Flanking_sequences: tcccggttgagctgaatctgaaaaatattg ataatcttccgaggaattgatgagtcaagt
    Mapping_target: C52E12
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00027394
    Laboratory: MT
    Status: Live
  Affects: Gene: WBGene00006831
      WBGene00005025
    Transcript: C52E12.2a.2 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 5056-?
        Exon_number: 24/24
      C52E12.3.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 240-?
        CDS_position: 240-?
        Protein_position: 80-?
        Intron_number: 2-5/6
        Exon_number: 2-7/7
      C52E12.2b.1 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 5386-?
        Exon_number: 25/25
      C52E12.3.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 242-?
        CDS_position: 240-?
        Protein_position: 80-?
        Intron_number: 3-8/8
        Exon_number: 3-9/9
      C52E12.2a.1 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 5190-?
        Exon_number: 24/24
  Isolation: Mutagen: UV illumination and trimethylpsoralen Paper_evidence: WBPaper00005540
  Genetics: Interpolated_map_position: II 0.27406
  Reference: WBPaper00005540
  Method: Deletion_allele