WormBase Tree Display for Variation: WBVar00089659
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| WBVar00089659 | Evidence | Paper_evidence | WBPaper00002543 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | n671 | |||||
| Other_name | Y71F9B.5a.2:c.1345C>T | ||||||
| Y71F9B.5a.1:c.1345C>T | |||||||
| Y71F9B.5b.1:c.1345C>T | |||||||
| CE50007:p.Gln381Ter | |||||||
| CE28810:p.Gln449Ter | |||||||
| CE25569:p.Gln449Ter | |||||||
| Y71F9B.5c.1:c.1141C>T | |||||||
| HGVSg | CHROMOSOME_I:g.2714848C>T | ||||||
| Sequence_details | SMap | S_parent | Sequence | Y71F9B | |||
| Flanking_sequences | tgtcaatgctataaattcatgattctcacc | aatggacccgaatgacaattgactgtaaac | |||||
| Mapping_target | Y71F9B | ||||||
| Type_of_mutation | Substitution | c | t | Paper_evidence | WBPaper00002543 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00008499 | ||||||
| WBStrain00008500 | |||||||
| WBStrain00008502 | |||||||
| WBStrain00024033 | |||||||
| WBStrain00026829 | |||||||
| WBStrain00026967 | |||||||
| WBStrain00027093 | |||||||
| WBStrain00027149 | |||||||
| Laboratory | MT | ||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00003006 | |||||
| Transcript | Y71F9B.5c.1 | VEP_consequence | stop_gained | ||||
| VEP_impact | HIGH | ||||||
| HGVSc | Y71F9B.5c.1:c.1141C>T | ||||||
| HGVSp | CE50007:p.Gln381Ter | ||||||
| cDNA_position | 1141 | ||||||
| CDS_position | 1141 | ||||||
| Protein_position | 381 | ||||||
| Exon_number | 6/7 | ||||||
| Codon_change | Caa/Taa | ||||||
| Amino_acid_change | Q/* | ||||||
| Y71F9B.5a.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | Y71F9B.5a.1:c.1345C>T | ||||||
| HGVSp | CE25569:p.Gln449Ter | ||||||
| cDNA_position | 1375 | ||||||
| CDS_position | 1345 | ||||||
| Protein_position | 449 | ||||||
| Exon_number | 9/11 | ||||||
| Codon_change | Caa/Taa | ||||||
| Amino_acid_change | Q/* | ||||||
| Y71F9B.5b.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | Y71F9B.5b.1:c.1345C>T | ||||||
| HGVSp | CE28810:p.Gln449Ter | ||||||
| cDNA_position | 1376 | ||||||
| CDS_position | 1345 | ||||||
| Protein_position | 449 | ||||||
| Exon_number | 9/11 | ||||||
| Codon_change | Caa/Taa | ||||||
| Amino_acid_change | Q/* | ||||||
| Y71F9B.5a.2 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | Y71F9B.5a.2:c.1345C>T | ||||||
| HGVSp | CE25569:p.Gln449Ter | ||||||
| cDNA_position | 1672 | ||||||
| CDS_position | 1345 | ||||||
| Protein_position | 449 | ||||||
| Exon_number | 10/12 | ||||||
| Codon_change | Caa/Taa | ||||||
| Amino_acid_change | Q/* | ||||||
| Interactor (76) | |||||||
| Genetics | Interpolated_map_position | I | -7.32074 | ||||
| Mapping_data | In_2_point | 3196 | |||||
| 7005 | |||||||
| 7006 | |||||||
| In_multi_point | 414 | ||||||
| 1044 | |||||||
| 1045 | |||||||
| 1050 | |||||||
| 2206 | |||||||
| 2207 | |||||||
| 3030 | |||||||
| 3200 | |||||||
| 3435 | |||||||
| In_pos_neg_data | 4081 | ||||||
| 4354 | |||||||
| 5696 | |||||||
| 6234 | |||||||
| 6577 | |||||||
| 6630 | |||||||
| 6640 | |||||||
| Description | Phenotype (35) | ||||||
| Phenotype_not_observed (8) | |||||||
| Reference (36) | |||||||
| Method | Substitution_allele |
