WormBase Tree Display for Variation: WBVar00089604
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| WBVar00089604 | Evidence | Paper_evidence | WBPaper00000635 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | n573 | |||||
| Other_name | CE35070:p.Gln509Ter | ||||||
| Y32H12A.5.1:c.1525C>T | |||||||
| HGVSg | CHROMOSOME_III:g.5376435G>A | ||||||
| Sequence_details | SMap | S_parent | Sequence | Y32H12A | |||
| Flanking_sequences | aaaaactaataacgtttattttttcagttc | aatcgcatcaactctttcacacatttgtcg | |||||
| Mapping_target | Y32H12A | ||||||
| Type_of_mutation | Substitution | c | t | Paper_evidence | WBPaper00046830 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00026811 | ||||||
| WBStrain00026842 | |||||||
| Laboratory | MT | ||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00021313 | |||||
| Transcript | Y32H12A.5.1 | VEP_consequence | stop_gained | ||||
| VEP_impact | HIGH | ||||||
| HGVSc | Y32H12A.5.1:c.1525C>T | ||||||
| HGVSp | CE35070:p.Gln509Ter | ||||||
| cDNA_position | 1535 | ||||||
| CDS_position | 1525 | ||||||
| Protein_position | 509 | ||||||
| Exon_number | 8/10 | ||||||
| Codon_change | Caa/Taa | ||||||
| Amino_acid_change | Q/* | ||||||
| Interactor | WBInteraction000525392 | ||||||
| WBInteraction000525393 | |||||||
| WBInteraction000525394 | |||||||
| WBInteraction000525395 | |||||||
| WBInteraction000525396 | |||||||
| WBInteraction000525397 | |||||||
| WBInteraction000525398 | |||||||
| WBInteraction000525399 | |||||||
| Genetics | Interpolated_map_position | III | -1.77174 | ||||
| Mapping_data | In_2_point | 733 | |||||
| 734 | |||||||
| In_multi_point | 630 | ||||||
| In_pos_neg_data | 1622 | ||||||
| 1623 | |||||||
| 1624 | |||||||
| Description | Phenotype (13) | ||||||
| Phenotype_not_observed | WBPhenotype:0000520 | Person_evidence | WBPerson261 | ||||
| Curator_confirmed | WBPerson712 | ||||||
| Remark | no obvious morphological defect | Person_evidence | WBPerson261 | ||||
| Curator_confirmed | WBPerson712 | ||||||
| Reference | WBPaper00000635 | ||||||
| WBPaper00046830 | |||||||
| Method | Substitution_allele |
