WormBase Tree Display for Variation: WBVar00089602

WBVar00089602 Evidence: Paper_evidence: WBPaper00003860
  Name: Public_name: n571
    Other_name: F22E12.4b.1:c.1083+172G>A
      F22E12.4b.3:c.1083+172G>A
      F22E12.4e.1:c.950+1G>A
      F22E12.4a.1:c.1178+1G>A
      F22E12.4c.1:c.404+1G>A
      F22E12.4d.1:c.1178+1G>A
      F22E12.4b.2:c.1083+172G>A
    HGVSg: CHROMOSOME_V:g.10474188G>A
  Sequence_details: SMap: S_parent: Sequence: Y32F6B
    Flanking_sequences: gggctcggatcactacaaatttaccgcgaa tgagtgactagatgtaaaggttttttgtcg
    Mapping_target: Y32F6B
    Type_of_mutation: Substitution: g a Paper_evidence: WBPaper00003860
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00026809
    Laboratory: MT
    Status: Live
  Affects: Gene: WBGene00001178
    Transcript: F22E12.4b.3 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: F22E12.4b.3:c.1083+172G>A
        Intron_number: 6/10
      F22E12.4b.2 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: F22E12.4b.2:c.1083+172G>A
        Intron_number: 7/8
      F22E12.4a.1 VEP_consequence: splice_donor_variant
        VEP_impact: HIGH
        HGVSc: F22E12.4a.1:c.1178+1G>A
        Intron_number: 8/11
      F22E12.4b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: F22E12.4b.1:c.1083+172G>A
        Intron_number: 7/10
      F22E12.4c.1 VEP_consequence: splice_donor_variant
        VEP_impact: HIGH
        HGVSc: F22E12.4c.1:c.404+1G>A
        Intron_number: 5/8
      F22E12.4e.1 VEP_consequence: splice_donor_variant
        VEP_impact: HIGH
        HGVSc: F22E12.4e.1:c.950+1G>A
        Intron_number: 5/7
      F22E12.4d.1 VEP_consequence: splice_donor_variant
        VEP_impact: HIGH
        HGVSc: F22E12.4d.1:c.1178+1G>A
        Intron_number: 8/10
    Interactor (84)
  Genetics: Interpolated_map_position: V 2.56742
  Description: Phenotype: WBPhenotype:0000006 Paper_evidence: WBPaper00000635
        Curator_confirmed: WBPerson48
      WBPhenotype:0000339 Person_evidence: WBPerson261
        Curator_confirmed: WBPerson712
        Remark: transient bloating, non-ts Person_evidence: WBPerson261
            Curator_confirmed: WBPerson712
      WBPhenotype:0001014 Paper_evidence: WBPaper00003860
        Curator_confirmed: WBPerson712
        Remark: Animals are resistant to paralysis by infection with P. aeruginosa PAO1. Paper_evidence: WBPaper00003860
            Curator_confirmed: WBPerson712
      WBPhenotype:0001765 Paper_evidence: WBPaper00031935
        Curator_confirmed: WBPerson712
        Remark: Animals showed attraction to carbon dioxide as opposed to the wild-type response of avoidance. Paper_evidence: WBPaper00031935
            Curator_confirmed: WBPerson712
        Phenotype_assay: Treatment: Strains were maintained at 22C. Animals were exposed to a 5% to 0% CO2 gradient. Paper_evidence: WBPaper00031935
              Curator_confirmed: WBPerson712
  Reference: WBPaper00031935
    WBPaper00000635
    WBPaper00003860
    WBPaper00025692
  Method: Substitution_allele