WormBase Tree Display for Variation: WBVar00089478

WBVar00089478 Evidence: Person_evidence: WBPerson27644
  Name: Public_name: n389
  Sequence_details: SMap: S_parent: Sequence: ZC247
    Flanking_sequences: cactgtgctcggaaaatgctggcatcagtc ttgaacatttctaattctaaatattatagt
    Mapping_target: ZC247
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00026745
      WBStrain00027230
      WBStrain00027231
    Laboratory: MT
    Status: Live
  Affects: Gene: WBGene00013859
      WBGene00201104
      WBGene00013860
      WBGene00003000
    Transcript: ZC247.3.1
      ZC247.2.1
      ZC247.1.1
      ZC247.6
    Interactor (16)
  Genetics: Interpolated_map_position: I 4.79669
    Mapping_data: In_2_point: 3202
      In_multi_point: 402
        403
      In_pos_neg_data: 748
        756
        765
  Description: Phenotype (16)
    Phenotype_not_observed: WBPhenotype:0000717 Paper_evidence: WBPaper00004906
        Curator_confirmed: WBPerson2021
        Remark: lin-11 mutants do not exhibit gene expression defects in ASH, ADL, ADF, ASER, ASEL, AWB, ASI, AFD and AVA Paper_evidence: WBPaper00004906
            Curator_confirmed: WBPerson2021
        Variation_effect: Null: Paper_evidence: WBPaper00004906
            Curator_confirmed: WBPerson2021
        Phenotype_assay: Genotype: ntIs1 (gcy-5::GFP), oyIs17 (gcy-8::GFP), kyIs128 (str-3::GFP), kyIs104 (str-1::GFP), oyIs14 (sra-6::GFP), otIs24 (sre-1::GFP), oyIs34 (T08G3.3::GFP), kyIs5 (ceh-23::GFP), kyIs29 (glr-1::GFP), lim-6p::GFP and gmIs12 (srb-6::GFP) Paper_evidence: WBPaper00004906
              Curator_confirmed: WBPerson2021
      WBPhenotype:0001660 Paper_evidence: WBPaper00006052
        Curator_confirmed: WBPerson2021
        Remark: No disruption of ASE asymmetry (as seen with gcy-7 reporters) Paper_evidence: WBPaper00006052
            Curator_confirmed: WBPerson2021
        Variation_effect: Null: Paper_evidence: WBPaper00006052
            Curator_confirmed: WBPerson2021
        Phenotype_assay: Genotype: otIs3 Paper_evidence: WBPaper00006052
              Curator_confirmed: WBPerson2021
      WBPhenotype:0001765 Paper_evidence: WBPaper00031936
        Curator_confirmed: WBPerson2021
        Remark: Mutants respond normally to CO2 Paper_evidence: WBPaper00031936
            Curator_confirmed: WBPerson2021
        EQ_annotations: Life_stage: WBls:0000057 PATO:0000460 Paper_evidence: WBPaper00031936
                Curator_confirmed: WBPerson2021
        Phenotype_assay: Treatment: 10% CO2 Paper_evidence: WBPaper00031936
              Curator_confirmed: WBPerson2021
      WBPhenotype:0002535 Paper_evidence: WBPaper00004906
        Curator_confirmed: WBPerson2021
        Remark: lin-11 mutants do not exhibit defects in DiI filling Paper_evidence: WBPaper00004906
            Curator_confirmed: WBPerson2021
        Variation_effect: Null: Paper_evidence: WBPaper00004906
            Curator_confirmed: WBPerson2021
        Phenotype_assay: Treatment: DiI filling Paper_evidence: WBPaper00004906
              Curator_confirmed: WBPerson2021
  Reference (11)
  Remark: Deletion also affects two adjacent genes ZC247.1 and ZC247.2 Person_evidence: WBPerson27644
      Curator_confirmed: WBPerson51134
    Variation information submitted by WBPerson27644 on 2023-05-31_19:01:43 via the Allele submission form. Curator_confirmed: WBPerson51134
  Method: Deletion_allele