WormBase Tree Display for Variation: WBVar00089240
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WBVar00089240 | Evidence | Person_evidence | WBPerson342 | |||
---|---|---|---|---|---|---|
Name | Public_name | mu232 | ||||
Other_name (12) | ||||||
HGVSg | CHROMOSOME_V:g.4499797T>A | |||||
Sequence_details | SMap | S_parent | Sequence | T28F12 | ||
Flanking_sequences | CAGCAAGGCCCCGTGTGTCGGCAACGACGA | GGCGCAGAGGGTACTTCTTCTTCTTCTTCT | ||||
Mapping_target | T28F12 | |||||
Type_of_mutation | Substitution | t | a | |||
SeqStatus | Sequenced | |||||
Variation_type | Allele | |||||
Origin | Species | Caenorhabditis elegans | ||||
Strain | WBStrain00004865 | |||||
Laboratory | CF | |||||
Status | Live | |||||
Affects | Gene | WBGene00006796 | ||||
Transcript | T28F12.2e.1 | VEP_consequence | start_lost | |||
VEP_impact | HIGH | |||||
SIFT | 0 | deleterious_low_confidence | ||||
PolyPhen | 0 | unknown | ||||
HGVSc | T28F12.2e.1:c.2T>A | |||||
HGVSp | CE33584:p.Met1? | |||||
cDNA_position | 2 | |||||
CDS_position | 2 | |||||
Protein_position | 1 | |||||
Exon_number | 1/10 | |||||
Codon_change | aTg/aAg | |||||
Amino_acid_change | M/K | |||||
T28F12.2d.4 | VEP_consequence | 5_prime_UTR_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | T28F12.2d.4:c.-1235T>A | |||||
cDNA_position | 322 | |||||
Exon_number | 1/12 | |||||
T28F12.2d.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | T28F12.2d.1:c.-1224-1422T>A | |||||
Intron_number | 1/11 | |||||
T28F12.2a.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | T28F12.2a.1:c.124-1422T>A | |||||
Intron_number | 2/11 | |||||
T28F12.2b.1 (12) | ||||||
T28F12.2d.2 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | T28F12.2d.2:c.-1242-1422T>A | |||||
Intron_number | 1/11 | |||||
T28F12.2c.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | T28F12.2c.1:c.-1806-1422T>A | |||||
Intron_number | 1/10 | |||||
T28F12.2d.3 | VEP_consequence | 5_prime_UTR_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | T28F12.2d.3:c.-1253T>A | |||||
cDNA_position | 471 | |||||
Exon_number | 1/12 | |||||
T28F12.2c.2 | VEP_consequence | 5_prime_UTR_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | T28F12.2c.2:c.-1433T>A | |||||
cDNA_position | 310 | |||||
Exon_number | 1/11 | |||||
T28F12.2f.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | T28F12.2f.1:c.124-1422T>A | |||||
Intron_number | 2/10 | |||||
Genetics | Interpolated_map_position | V | -5.19498 | |||
Reference | WBPaper00025016 | |||||
WBPaper00050135 | ||||||
Method | Substitution_allele |