WormBase Tree Display for Variation: WBVar00088713
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WBVar00088713 | Evidence | Paper_evidence | WBPaper00002589 | |||||
---|---|---|---|---|---|---|---|---|
Name | Public_name | m592 | ||||||
Other_name | C05D2.1b.1:c.1022G>A | |||||||
C05D2.1c.2:c.1223G>A | ||||||||
CE32114:p.Arg408Lys | ||||||||
CE51327:p.Arg539Lys | ||||||||
C05D2.1a.1:c.1679G>A | ||||||||
C05D2.1e.1:c.1616G>A | ||||||||
C05D2.1c.1:c.1223G>A | ||||||||
CE51404:p.Arg341Lys | ||||||||
C05D2.1c.3:c.1223G>A | ||||||||
CE16827:p.Arg560Lys | ||||||||
HGVSg | CHROMOSOME_III:g.5630820G>A | |||||||
Sequence_details | SMap | S_parent | Sequence | C05D2 | ||||
Flanking_sequences | tggtgagcaagaaggaacgaccacaatgga | agatgagattattaaacatgaatatatgag | ||||||
Mapping_target | C05D2 | |||||||
Type_of_mutation | Substitution | g | a | Paper_evidence | WBPaper00023888 | |||
SeqStatus | Sequenced | |||||||
Variation_type | Allele | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00030737 | |||||||
WBStrain00030749 | ||||||||
WBStrain00030752 | ||||||||
WBStrain00030757 | ||||||||
WBStrain00030758 | ||||||||
Laboratory | DR | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00000900 | ||||||
Transcript | C05D2.1e.1 (12) | |||||||
C05D2.1c.1 (12) | ||||||||
C05D2.1b.1 (12) | ||||||||
C05D2.1c.2 (12) | ||||||||
C05D2.1c.3 (12) | ||||||||
C05D2.1a.1 (12) | ||||||||
Interactor | WBInteraction000555972 | |||||||
Genetics | Interpolated_map_position | III | -1.46753 | |||||
Description | Phenotype | WBPhenotype:0000229 | Paper_evidence | WBPaper00002374 | ||||
Person_evidence | WBPerson261 | |||||||
Curator_confirmed | WBPerson712 | |||||||
WBPerson551 | ||||||||
Remark | ts for Sma | Person_evidence | WBPerson261 | |||||
Curator_confirmed | WBPerson712 | |||||||
Temperature_sensitive | Heat_sensitive | Person_evidence | WBPerson261 | |||||
Curator_confirmed | WBPerson712 | |||||||
WBPhenotype:0000296 | Paper_evidence | WBPaper00003626 | ||||||
Curator_confirmed | WBPerson37 | |||||||
Remark | m592 phenotype is temperature sensitive, temperature critical period late L3/early L4 | Paper_evidence | WBPaper00003626 | |||||
Curator_confirmed | WBPerson37 | |||||||
Temperature_sensitive | Heat_sensitive | 25 | Paper_evidence | WBPaper00003626 | ||||
Curator_confirmed | WBPerson37 | |||||||
WBPhenotype:0000297 | Paper_evidence | WBPaper00002374 | ||||||
Curator_confirmed | WBPerson551 | |||||||
Remark | Table 1 | Paper_evidence | WBPaper00002374 | |||||
Curator_confirmed | WBPerson551 | |||||||
Temperature_sensitive | Heat_sensitive | 25 | Paper_evidence | WBPaper00002374 | ||||
Curator_confirmed | WBPerson551 | |||||||
WBPhenotype:0001690 | Paper_evidence | WBPaper00002589 | ||||||
Curator_confirmed | WBPerson712 | |||||||
Remark | Animals bind mAb M37 at stages L1-L4 but not as adults, wildtype worms only bind this anti-body at the L1 stage. Animals in dauer stage do not bind mAb 37, similar to wildtype. | Paper_evidence | WBPaper00002589 | |||||
Curator_confirmed | WBPerson712 | |||||||
Penetrance | Incomplete | 80% | Paper_evidence | WBPaper00002589 | ||||
Curator_confirmed | WBPerson712 | |||||||
Temperature_sensitive | Heat_sensitive | 25C | Paper_evidence | WBPaper00002589 | ||||
Curator_confirmed | WBPerson712 | |||||||
Phenotype_assay | Temperature | 25 | Paper_evidence | WBPaper00002589 | ||||
Curator_confirmed | WBPerson712 | |||||||
Reference | WBPaper00002589 | |||||||
WBPaper00002374 | ||||||||
WBPaper00003626 | ||||||||
Method | Substitution_allele |