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WormBase Tree Display for Variation: WBVar00088435

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Name Class

WBVar00088435EvidencePaper_evidenceWBPaper00004523
NamePublic_nameky326
Other_nameF15A2.6a.1:c.2413_2493del
CE28218:p.Asp805_Thr831del
CE40646:p.Asp805_Thr831del
F15A2.6b.1:c.2413_2493del
HGVSgCHROMOSOME_X:g.13489623_13489703del
Sequence_detailsSMapS_parentSequenceF15A2
Flanking_sequencesgtagagtctttaaaaaatctttccttccagggtaattcaaaaaaaaatatttacacaaac
Mapping_targetF15A2
Type_of_mutationDeletion
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryCX
StatusLive
AffectsGeneWBGene00004719
TranscriptF15A2.6b.1VEP_consequenceinframe_deletion,splice_region_variant
VEP_impactMODERATE
HGVScF15A2.6b.1:c.2413_2493del
HGVSpCE40646:p.Asp805_Thr831del
cDNA_position2529-2609
CDS_position2413-2493
Protein_position805-831
Exon_number15/19
Codon_changeGATAAAACTGAAACAACTTCTGCCACGTCATCTGACCCTTACGGTCCATCCCCGTCAATGCGATCTGTTGGAAGTGGAACA/-
Amino_acid_changeDKTETTSATSSDPYGPSPSMRSVGSGT/-
F15A2.6a.1VEP_consequenceinframe_deletion,splice_region_variant
VEP_impactMODERATE
HGVScF15A2.6a.1:c.2413_2493del
HGVSpCE28218:p.Asp805_Thr831del
cDNA_position2523-2603
CDS_position2413-2493
Protein_position805-831
Exon_number15/18
Codon_changeGATAAAACTGAAACAACTTCTGCCACGTCATCTGACCCTTACGGTCCATCCCCGTCAATGCGATCTGTTGGAAGTGGAACA/-
Amino_acid_changeDKTETTSATSSDPYGPSPSMRSVGSGT/-
GeneticsInterpolated_map_positionX12.6465
ReferenceWBPaper00004523
Remarkky326 is described as a deletion of amino acids 805-831, resulting in a subsequent frameshift. Breakpoints at the DNA level are not given; the left and right flanking sequences correspond to codons 805 and 831, respectively.Paper_evidenceWBPaper00004523
MethodDeletion_allele