WormBase Tree Display for Variation: WBVar00088156

WBVar00088156 Evidence: Paper_evidence: WBPaper00005014
  Name: Public_name: ju79
    Other_name (19)
    HGVSg: CHROMOSOME_III:g.9553270G>A
  Sequence_details: SMap: S_parent: Sequence: ZK1098
    Flanking_sequences: tgatgcacgtgaaagtgaacttgacgaatg caatcatcatctcttgtctgggttgttagc
    Mapping_target: ZK1098
    Type_of_mutation: Substitution: g a
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: CZ
    Status: Live
  Affects: Gene: WBGene00006755
    Transcript: ZK1098.10g.1 VEP_consequence: stop_gained
        VEP_impact: HIGH
        HGVSc: ZK1098.10g.1:c.981G>A
        HGVSp: CE48500:p.Trp327Ter
        cDNA_position: 981
        CDS_position: 981
        Protein_position: 327
        Exon_number: 6/14
        Codon_change: tgG/tgA
        Amino_acid_change: W/*
      ZK1098.10b.1 VEP_consequence: stop_gained
        VEP_impact: HIGH
        HGVSc: ZK1098.10b.1:c.1932G>A
        HGVSp: CE31846:p.Trp644Ter
        cDNA_position: 1996
        CDS_position: 1932
        Protein_position: 644
        Exon_number: 13/22
        Codon_change: tgG/tgA
        Amino_acid_change: W/*
      ZK1098.10a.2 VEP_consequence: stop_gained
        VEP_impact: HIGH
        HGVSc: ZK1098.10a.2:c.1878G>A
        HGVSp: CE00363:p.Trp626Ter
        cDNA_position: 2022
        CDS_position: 1878
        Protein_position: 626
        Exon_number: 14/23
        Codon_change: tgG/tgA
        Amino_acid_change: W/*
      ZK1098.10o.1 VEP_consequence: stop_gained
        VEP_impact: HIGH
        HGVSc: ZK1098.10o.1:c.999G>A
        HGVSp: CE48464:p.Trp333Ter
        cDNA_position: 999
        CDS_position: 999
        Protein_position: 333
        Exon_number: 7/15
        Codon_change: tgG/tgA
        Amino_acid_change: W/*
      ZK1098.10a.1 VEP_consequence: stop_gained
        VEP_impact: HIGH
        HGVSc: ZK1098.10a.1:c.1878G>A
        HGVSp: CE00363:p.Trp626Ter
        cDNA_position: 2087
        CDS_position: 1878
        Protein_position: 626
        Exon_number: 15/24
        Codon_change: tgG/tgA
        Amino_acid_change: W/*
      ZK1098.10f.1 VEP_consequence: stop_gained
        VEP_impact: HIGH
        HGVSc: ZK1098.10f.1:c.1185G>A
        HGVSp: CE44092:p.Trp395Ter
        cDNA_position: 1185
        CDS_position: 1185
        Protein_position: 395
        Exon_number: 8/16
        Codon_change: tgG/tgA
        Amino_acid_change: W/*
      ZK1098.10e.1 VEP_consequence: stop_gained
        VEP_impact: HIGH
        HGVSc: ZK1098.10e.1:c.2031G>A
        HGVSp: CE43483:p.Trp677Ter
        cDNA_position: 2095
        CDS_position: 2031
        Protein_position: 677
        Exon_number: 14/23
        Codon_change: tgG/tgA
        Amino_acid_change: W/*
      ZK1098.10p.1 VEP_consequence: stop_gained
        VEP_impact: HIGH
        HGVSc: ZK1098.10p.1:c.99G>A
        HGVSp: CE48473:p.Trp33Ter
        cDNA_position: 99
        CDS_position: 99
        Protein_position: 33
        Exon_number: 2/11
        Codon_change: tgG/tgA
        Amino_acid_change: W/*
      ZK1098.10c.1 VEP_consequence: stop_gained
        VEP_impact: HIGH
        HGVSc: ZK1098.10c.1:c.99G>A
        HGVSp: CE41490:p.Trp33Ter
        cDNA_position: 99
        CDS_position: 99
        Protein_position: 33
        Exon_number: 2/10
        Codon_change: tgG/tgA
        Amino_acid_change: W/*
      ZK1098.10d.1 VEP_consequence: stop_gained
        VEP_impact: HIGH
        HGVSc: ZK1098.10d.1:c.1932G>A
        HGVSp: CE41491:p.Trp644Ter
        cDNA_position: 1996
        CDS_position: 1932
        Protein_position: 644
        Exon_number: 13/23
        Codon_change: tgG/tgA
        Amino_acid_change: W/*
    Interactor: WBInteraction000501736
      WBInteraction000502014
      WBInteraction000542005
      WBInteraction000542006
      WBInteraction000542007
      WBInteraction000542008
      WBInteraction000542009
  Genetics: Interpolated_map_position: III 0.590051
  Reference: WBPaper00010139
    WBPaper00018908
    WBPaper00011978
  Method: Substitution_allele