WormBase Tree Display for Variation: WBVar00087847
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| WBVar00087847 | Evidence | Paper_evidence | WBPaper00026765 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | hd43 | ||||
| HGVSg | CHROMOSOME_IV:g.9540641_9541751del | |||||
| Sequence_details | SMap | S_parent | Sequence | F56H11 | ||
| Flanking_sequences | tttaaaaatctgaaagttttcagtacaaac | aggtatgaatatgttttacgcttttttttg | ||||
| Mapping_target | F56H11 | |||||
| Type_of_mutation | Deletion | tttttttacttgccctgtgtacgaaatatgatctaaatgagcacatgatgatgtgatattatttgatctttcctcgaaatcctactcattttctttgtgtcgtgccacttccgttccaattcacaactttttgtgtttccgttacaacattatctgctttcttacagaattacggaaaccccgtggaaattttagtagattggatagaaatatgcgaatttgtttcttattattggcatttttggtggcaggtaagctttttaaattttttcaaatatttatttaaattttatgaataattaataaagagggccctcaaaaacactttgaaaataggccattttctaacattatccataaaaagaaaactatcacaaacaacgggaaactttcaaaattttcagagacctttgccaacgaacttacaagatgttgtgctggaggaactcgtcatttcaagaattcaaatacttgttcaagtatcaaaagcgaaggaacaagtatgacgtgccaaagagctgcatccatatgttgtctcagaagtttattggataatgcatgtgactctggtacagatattgcaaaagaagaggagagctgcccaagtaatataaatattttgggaggtggattgaaaaaagtaattttaaaaaatcgaataaaaatataaattgagatggatttcaggagtgttgtgattgctgtcttctagccaaagatttgctcaatcgaaatgaaccgtgtgttgctccagttggattttcagctggatgtttgagaagtttcaataaatgttgtaatggtgacattgaaatcacacatgcttccgagatcataactggtaggaaaacagaacattttcaatattatttctttttaaaaaattgaaataatttaattcggaacttttcataaaaaatacccgatttaatgttaaaattgttttttcatgttttacaggacgtccactcaatgatccacatgtacttcatctcggcgaccgatgtgcgtcatctcactgtgagcacctctgtcatgatcgtggaggcgaaaaggttgaatgcagttgcagatctggattcgacttggcaccagatggaatggcttgtgt | Paper_evidence | WBPaper00026765 | ||
| SeqStatus | Sequenced | |||||
| Variation_type | Allele | |||||
| Origin | Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00003953 | |||||
| Laboratory | VH | |||||
| Status | Live | |||||
| Affects | Gene | WBGene00001403 | ||||
| Transcript | F56H11.1e.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | |||||
| cDNA_position | ?-581 | |||||
| CDS_position | ?-581 | |||||
| Protein_position | ?-194 | |||||
| Intron_number | 1-3/11 | |||||
| Exon_number | 1-4/12 | |||||
| F56H11.1d.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | ||||
| VEP_impact | HIGH | |||||
| cDNA_position | ?-581 | |||||
| CDS_position | ?-581 | |||||
| Protein_position | ?-194 | |||||
| Intron_number | 1-3/11 | |||||
| Exon_number | 1-4/12 | |||||
| F56H11.1a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | ||||
| VEP_impact | HIGH | |||||
| cDNA_position | ?-625 | |||||
| CDS_position | ?-581 | |||||
| Protein_position | ?-194 | |||||
| Intron_number | 2-4/15 | |||||
| Exon_number | 1-5/16 | |||||
| F56H11.1g.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | ||||
| VEP_impact | HIGH | |||||
| cDNA_position | ?-625 | |||||
| CDS_position | ?-581 | |||||
| Protein_position | ?-194 | |||||
| Intron_number | 2-4/15 | |||||
| Exon_number | 1-5/16 | |||||
| F56H11.1h.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | ||||
| VEP_impact | HIGH | |||||
| cDNA_position | ?-581 | |||||
| CDS_position | ?-581 | |||||
| Protein_position | ?-194 | |||||
| Intron_number | 1-3/11 | |||||
| Exon_number | 1-4/12 | |||||
| F56H11.1c.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | ||||
| VEP_impact | HIGH | |||||
| cDNA_position | ?-627 | |||||
| CDS_position | ?-581 | |||||
| Protein_position | ?-194 | |||||
| Intron_number | 2-4/15 | |||||
| Exon_number | 1-5/16 | |||||
| F56H11.1f.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | ||||
| VEP_impact | HIGH | |||||
| cDNA_position | ?-581 | |||||
| CDS_position | ?-581 | |||||
| Protein_position | ?-194 | |||||
| Intron_number | 1-3/11 | |||||
| Exon_number | 1-4/12 | |||||
| F56H11.1b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | ||||
| VEP_impact | HIGH | |||||
| cDNA_position | ?-598 | |||||
| CDS_position | ?-581 | |||||
| Protein_position | ?-194 | |||||
| Intron_number | 2-4/15 | |||||
| Exon_number | 1-5/16 | |||||
| Interactor | WBInteraction000502203 | |||||
| WBInteraction000524608 | ||||||
| Isolation | Mutagen | EMS | ||||
| Genetics | Interpolated_map_position | IV | 4.30297 | |||
| Reference | WBPaper00026765 | |||||
| Method | Deletion_allele |
