WormBase Tree Display for Variation: WBVar00085390
expand all nodes | collapse all nodes | view schema
WBVar00085390 | Name | Public_name | WBVar00085390 | ||
---|---|---|---|---|---|
Other_name (18) | |||||
HGVSg | CHROMOSOME_X:g.14616019A>G | ||||
Sequence_details | SMap | S_parent | Sequence | F54E4 | |
Flanking_sequences | attcaatttattctgctttagtgaa | cttgagaatatggttcgtcttgatt | |||
Mapping_target | F54E4 | ||||
Type_of_mutation | Substitution | A | G | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
WGS_Hawaiian_Waterston | |||||
Laboratory | RW | ||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00004313 | |||
Transcript | F54E4.1a.1 | VEP_consequence | synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | F54E4.1a.1:c.3351A>G | ||||
HGVSp | CE47867:p.Lys1117= | ||||
cDNA_position | 3374 | ||||
CDS_position | 3351 | ||||
Protein_position | 1117 | ||||
Exon_number | 15/34 | ||||
Codon_change | aaA/aaG | ||||
Amino_acid_change | K | ||||
F54E4.1g.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F54E4.1g.1:c.3318A>G | ||||
HGVSp | CE53145:p.Lys1106= | ||||
cDNA_position | 3347 | ||||
CDS_position | 3318 | ||||
Protein_position | 1106 | ||||
Exon_number | 15/35 | ||||
Codon_change | aaA/aaG | ||||
Amino_acid_change | K | ||||
F54E4.1e.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F54E4.1e.1:c.3357A>G | ||||
HGVSp | CE53335:p.Lys1119= | ||||
cDNA_position | 3357 | ||||
CDS_position | 3357 | ||||
Protein_position | 1119 | ||||
Exon_number | 14/33 | ||||
Codon_change | aaA/aaG | ||||
Amino_acid_change | K | ||||
F54E4.1d.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F54E4.1d.1:c.3324A>G | ||||
HGVSp | CE53152:p.Lys1108= | ||||
cDNA_position | 3324 | ||||
CDS_position | 3324 | ||||
Protein_position | 1108 | ||||
Exon_number | 14/32 | ||||
Codon_change | aaA/aaG | ||||
Amino_acid_change | K | ||||
F54E4.1f.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F54E4.1f.1:c.3357A>G | ||||
HGVSp | CE53441:p.Lys1119= | ||||
cDNA_position | 3357 | ||||
CDS_position | 3357 | ||||
Protein_position | 1119 | ||||
Exon_number | 14/32 | ||||
Codon_change | aaA/aaG | ||||
Amino_acid_change | K | ||||
F54E4.1c.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F54E4.1c.1:c.3324A>G | ||||
HGVSp | CE53448:p.Lys1108= | ||||
cDNA_position | 3324 | ||||
CDS_position | 3324 | ||||
Protein_position | 1108 | ||||
Exon_number | 14/33 | ||||
Codon_change | aaA/aaG | ||||
Amino_acid_change | K | ||||
F54E4.1h.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F54E4.1h.1:c.3318A>G | ||||
HGVSp | CE53229:p.Lys1106= | ||||
cDNA_position | 3341 | ||||
CDS_position | 3318 | ||||
Protein_position | 1106 | ||||
Exon_number | 15/34 | ||||
Codon_change | aaA/aaG | ||||
Amino_acid_change | K | ||||
F54E4.1b.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F54E4.1b.1:c.3351A>G | ||||
HGVSp | CE47930:p.Lys1117= | ||||
cDNA_position | 3351 | ||||
CDS_position | 3351 | ||||
Protein_position | 1117 | ||||
Exon_number | 14/34 | ||||
Codon_change | aaA/aaG | ||||
Amino_acid_change | K | ||||
Remark | [20081124 db] this Variation was previously named hw109750 | ||||
Method | WGS_Hawaiian_Waterston |