WormBase Tree Display for Variation: WBVar00078553
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WBVar00078553 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00078553 | |||
Other_name | snp_C42D8[1] | ||||
haw102913 | |||||
cewivar00125948 | |||||
C42D8.4a.1:c.312+199T>A | |||||
C42D8.4a.3:c.312+199T>A | |||||
C42D8.4a.4:c.312+199T>A | |||||
C42D8.4a.2:c.312+199T>A | |||||
C42D8.4b.1:c.426+199T>A | |||||
HGVSg | CHROMOSOME_X:g.5081064A>T | ||||
Sequence_details | SMap | S_parent | Sequence | C42D8 | |
Flanking_sequences | aaaaatgtttccaatcttttttttt | aatttcaccatgacttctgttgcac | |||
Mapping_target | C42D8 | ||||
Type_of_mutation | Substitution | A | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00004602 | From_analysis | SNP_Wicks | |||
WGS_Hawaiian_Waterston | |||||
Million_mutation_project_reanalysis | |||||
WBStrain00022886 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023072 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
Laboratory | RW | ||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
Million_mutation_project_reanalysis | |||||
SNP_Wicks | |||||
History | Acquires_merge | WBVar00243601 | |||
Status | Live | ||||
Affects | Gene | WBGene00016600 | |||
Transcript | C42D8.4a.3 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | C42D8.4a.3:c.312+199T>A | ||||
Intron_number | 5/8 | ||||
C42D8.4b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C42D8.4b.1:c.426+199T>A | ||||
Intron_number | 4/6 | ||||
C42D8.4a.4 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C42D8.4a.4:c.312+199T>A | ||||
Intron_number | 2/6 | ||||
C42D8.4a.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C42D8.4a.2:c.312+199T>A | ||||
Intron_number | 4/7 | ||||
C42D8.4a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C42D8.4a.1:c.312+199T>A | ||||
Intron_number | 5/8 | ||||
Reference | WBPaper00004703 | ||||
Remark | [20081124 db] this Variation was previously named hw102913 | ||||
Method | WGS_Hawaiian_Waterston |