Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Variation: WBVar00078553

expand all nodes | collapse all nodes | view schema

Name Class

WBVar00078553EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00078553
Other_namesnp_C42D8[1]
haw102913
cewivar00125948
C42D8.4a.1:c.312+199T>A
C42D8.4a.3:c.312+199T>A
C42D8.4a.4:c.312+199T>A
C42D8.4a.2:c.312+199T>A
C42D8.4b.1:c.426+199T>A
HGVSgCHROMOSOME_X:g.5081064A>T
Sequence_detailsSMapS_parentSequenceC42D8
Flanking_sequencesaaaaatgtttccaatctttttttttaatttcaccatgacttctgttgcac
Mapping_targetC42D8
Type_of_mutationSubstitutionAT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004599From_analysisMillion_mutation_project_reanalysis
WBStrain00004602From_analysisSNP_Wicks
WGS_Hawaiian_Waterston
Million_mutation_project_reanalysis
WBStrain00022886From_analysisMillion_mutation_project_reanalysis
WBStrain00023072From_analysisMillion_mutation_project_reanalysis
WBStrain00023139From_analysisMillion_mutation_project_reanalysis
WBStrain00027648From_analysisMillion_mutation_project_reanalysis
WBStrain00027660From_analysisMillion_mutation_project_reanalysis
LaboratoryRW
PersonWBPerson1562
AnalysisWGS_Hawaiian_Waterston
Million_mutation_project_reanalysis
SNP_Wicks
HistoryAcquires_mergeWBVar00243601
StatusLive
AffectsGeneWBGene00016600
TranscriptC42D8.4a.3VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC42D8.4a.3:c.312+199T>A
Intron_number5/8
C42D8.4b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC42D8.4b.1:c.426+199T>A
Intron_number4/6
C42D8.4a.4VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC42D8.4a.4:c.312+199T>A
Intron_number2/6
C42D8.4a.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC42D8.4a.2:c.312+199T>A
Intron_number4/7
C42D8.4a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC42D8.4a.1:c.312+199T>A
Intron_number5/8
ReferenceWBPaper00004703
Remark[20081124 db] this Variation was previously named hw102913
MethodWGS_Hawaiian_Waterston