WormBase Tree Display for Variation: WBVar00076389
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| WBVar00076389 | Evidence | Paper_evidence | WBPaper00005369 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00076389 | |||
| Other_name | uCE6-769 | ||||
| haw100749 | |||||
| cewivar00270860 | |||||
| T02C5.3e.1:c.1150-90C>T | |||||
| T02C5.3b.1:c.1297-90C>T | |||||
| T02C5.3g.1:c.937-90C>T | |||||
| T02C5.3f.1:c.937-90C>T | |||||
| T02C5.3d.1:c.1150-90C>T | |||||
| T02C5.3c.1:c.1297-90C>T | |||||
| T02C5.3a.1:c.1297-90C>T | |||||
| HGVSg | CHROMOSOME_X:g.2701237G>A | ||||
| Sequence_details | SMap | S_parent | Sequence | T02C5 | |
| Flanking_sequences | tttggtcacgttatttcattggtta | ggtgcatttaaagcccgaaggtgat | |||
| Mapping_target | T02C5 | ||||
| Type_of_mutation | Substitution | G | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Swan | ||
| WGS_Hawaiian_Waterston | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022868 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022878 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022886 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022902 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023072 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| Person | WBPerson1562 | ||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| Million_mutation_project_reanalysis | |||||
| SNP_Swan | |||||
| History | Acquires_merge | WBVar00274115 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00020160 | |||
| Transcript | T02C5.3f.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | T02C5.3f.1:c.937-90C>T | ||||
| Intron_number | 5/9 | ||||
| T02C5.3b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T02C5.3b.1:c.1297-90C>T | ||||
| Intron_number | 8/13 | ||||
| T02C5.3g.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T02C5.3g.1:c.937-90C>T | ||||
| Intron_number | 5/9 | ||||
| T02C5.3a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T02C5.3a.1:c.1297-90C>T | ||||
| Intron_number | 8/12 | ||||
| T02C5.3e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T02C5.3e.1:c.1150-90C>T | ||||
| Intron_number | 6/10 | ||||
| T02C5.3d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T02C5.3d.1:c.1150-90C>T | ||||
| Intron_number | 6/10 | ||||
| T02C5.3c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T02C5.3c.1:c.1297-90C>T | ||||
| Intron_number | 7/12 | ||||
| Reference | WBPaper00005369 | ||||
| Remark | [20081124 db] this Variation was previously named hw100749 | ||||
| Method | WGS_Hawaiian_Waterston |
