WormBase Tree Display for Variation: WBVar00073449
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WBVar00073449 | Name | Public_name | WBVar00073449 | ||
---|---|---|---|---|---|
Other_name | haw97809 | ||||
cewivar00266334 | |||||
CE52948:p.Phe113= | |||||
F26F2.7d.1:c.-70T>C | |||||
F26F2.7c.1:c.339T>C | |||||
F26F2.7b.1:c.969T>C | |||||
CE19819:p.Phe321= | |||||
CE52915:p.Phe323= | |||||
F26F2.7a.1:c.963T>C | |||||
HGVSg | CHROMOSOME_V:g.20584793T>C | ||||
Sequence_details | SMap | S_parent | Sequence | F26F2 | |
Flanking_sequences | tcctctacgcaacactacactcatt | ctcgtaattctacaagccaccacac | |||
Mapping_target | F26F2 | ||||
Type_of_mutation | Substitution | T | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
WGS_Hawaiian_Waterston | |||||
WBStrain00023072 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
Laboratory | RW | ||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00009172 | |||
Transcript | F26F2.7b.1 | VEP_consequence | synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | F26F2.7b.1:c.969T>C | ||||
HGVSp | CE52915:p.Phe323= | ||||
cDNA_position | 1020 | ||||
CDS_position | 969 | ||||
Protein_position | 323 | ||||
Exon_number | 10/17 | ||||
Codon_change | ttT/ttC | ||||
Amino_acid_change | F | ||||
F26F2.7d.1 | VEP_consequence | 5_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F26F2.7d.1:c.-70T>C | ||||
cDNA_position | 127 | ||||
Exon_number | 1/9 | ||||
F26F2.7c.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F26F2.7c.1:c.339T>C | ||||
HGVSp | CE52948:p.Phe113= | ||||
cDNA_position | 339 | ||||
CDS_position | 339 | ||||
Protein_position | 113 | ||||
Exon_number | 3/9 | ||||
Codon_change | ttT/ttC | ||||
Amino_acid_change | F | ||||
F26F2.7a.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F26F2.7a.1:c.963T>C | ||||
HGVSp | CE19819:p.Phe321= | ||||
cDNA_position | 1008 | ||||
CDS_position | 963 | ||||
Protein_position | 321 | ||||
Exon_number | 10/17 | ||||
Codon_change | ttT/ttC | ||||
Amino_acid_change | F | ||||
Remark | [20081124 db] this Variation was previously named hw97809 | ||||
Method | WGS_Hawaiian_Waterston |