WormBase Tree Display for Variation: WBVar00071087
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WBVar00071087 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00071087 | |||
Other_name | pas39052 | ||||
snp_Y43F8C[3] | |||||
haw95447 | |||||
cewivar00052611 | |||||
B0399.1e.1:c.221+1869G>A | |||||
B0399.1f.1:c.473+1869G>A | |||||
B0399.1d.1:c.428+1869G>A | |||||
B0399.1a.1:c.764+1869G>A | |||||
B0399.1b.1:c.623+1869G>A | |||||
HGVSg | CHROMOSOME_V:g.19598462G>A | ||||
Sequence_details | SMap | S_parent | Sequence | Y43F8C | |
Flanking_sequences | tttaatctaattcagatttttataa | tttgtgacgatttttttcaataaaa | |||
Mapping_target | Y43F8C | ||||
Type_of_mutation | Substitution | G | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (32) | |||||
Laboratory | RW | ||||
Person | WBPerson1562 | ||||
WBPerson6900 | |||||
Analysis | WGS_Hawaiian_Waterston | ||||
Million_mutation_project_reanalysis | |||||
SNP_Wicks | |||||
WGS_Pasadena_Quinlan | |||||
History | Acquires_merge | WBVar00247191 | |||
WBVar00227276 | |||||
Status | Live | ||||
Affects | Gene | WBGene00007176 | |||
Transcript | B0399.1b.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | B0399.1b.1:c.623+1869G>A | ||||
Intron_number | 6/14 | ||||
B0399.1d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | B0399.1d.1:c.428+1869G>A | ||||
Intron_number | 2/9 | ||||
B0399.1f.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | B0399.1f.1:c.473+1869G>A | ||||
Intron_number | 5/12 | ||||
B0399.1a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | B0399.1a.1:c.764+1869G>A | ||||
Intron_number | 6/14 | ||||
B0399.1e.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | B0399.1e.1:c.221+1869G>A | ||||
Intron_number | 3/11 | ||||
Reference | WBPaper00004703 | ||||
Remark | [20081124 db] this Variation was previously named hw95447 | ||||
Method | WGS_Hawaiian_Waterston |