WormBase Tree Display for Variation: WBVar00064239
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| WBVar00064239 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00064239 | |||
| Other_name | pas24445 | ||||
| pkP6040 | |||||
| cewivar00061446 | |||||
| F11A1.3e.3:c.-6-6296G>A | |||||
| F11A1.3a.1:c.172-6296G>A | |||||
| F11A1.3e.1:c.-6-6296G>A | |||||
| F11A1.3g.1:c.172-6296G>A | |||||
| F11A1.3e.4:c.-6-6296G>A | |||||
| HGVSg | CHROMOSOME_X:g.10654500G>A | ||||
| Sequence_details | SMap | S_parent | Sequence | F11A1 | |
| Flanking_sequences | aatcttcaaaaagttctatcgcacttggtgagtactgtactctgacatttttaaaacatgaagtaaattcttaaatttctttgttagttttatagccacatatgaaatcatttttttctcattcttattctgattgcatagcctagaaaatttaaaatttaaacagtcgttcaaaaataattattttgaatcatgattttggtattgaatgttagctgcatatgtttttgtgggggaggactttttgcacattaaagttttaaaaaatttaggaaaaatgccactgtagtgaaggcggat | tcagttagcagttaaaggcattccaacattttccatgagtaatgtccttgttaccattacatttcaacttgccaacacatacacaggaagactgaaaaaaatgaacgcatgagacatagacaacgagtatttttgccccaaagcaccagcccaatagtatgactgcgttctcttcgatccgtgcggtctattcgactgtttttgccgtgtgcactgccgtcggtcgttgttgatgtttttcgttcatggcactcgtccgttctccgtccgagcgtgtgtgcttcctcccttatagctatg | |||
| Mapping_target | F11A1 | ||||
| Type_of_mutation | Substitution | G | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (38) | |||||
| Laboratory | NL | ||||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| SNP_Wicks | |||||
| History | Acquires_merge | WBVar00240905 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00000908 | |||
| Transcript | F11A1.3e.4 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F11A1.3e.4:c.-6-6296G>A | ||||
| Intron_number | 1/18 | ||||
| F11A1.3a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F11A1.3a.1:c.172-6296G>A | ||||
| Intron_number | 2/17 | ||||
| F11A1.3e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F11A1.3e.1:c.-6-6296G>A | ||||
| Intron_number | 2/19 | ||||
| F11A1.3g.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F11A1.3g.1:c.172-6296G>A | ||||
| Intron_number | 3/18 | ||||
| F11A1.3e.3 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F11A1.3e.3:c.-6-6296G>A | ||||
| Intron_number | 3/20 | ||||
| Reference | WBPaper00004703 | ||||
| Method | WGS_Pasadena_Quinlan |
