WormBase Tree Display for Variation: WBVar00062099
expand all nodes | collapse all nodes | view schema
WBVar00062099 | Name | Public_name | WBVar00062099 | ||
---|---|---|---|---|---|
Other_name | pas24017 | ||||
haw106534 | |||||
cewivar00060829 | |||||
T06H11.1g.1:c.1153+140T>C | |||||
T06H11.1f.1:c.1468+140T>C | |||||
T06H11.1c.1:c.1204+140T>C | |||||
T06H11.1b.1:c.1279+140T>C | |||||
T06H11.1d.1:c.1348+140T>C | |||||
T06H11.1a.1:c.1393+140T>C | |||||
T06H11.1e.1:c.1123+140T>C | |||||
HGVSg | CHROMOSOME_X:g.10105925A>G | ||||
Sequence_details | SMap | S_parent | Sequence | T06H11 | |
Flanking_sequences | ggacgcaagatccacgcacatggtcactacggaaagacctgaaagaaaaatttgtttcctaactcggctattttataccacaaaatttcaaaatgaaaatatttatcatgtattccattgttattccaccgttcgattgttgaaaaattattttttaaatcttattttaagccttgacaatctgaatataaataaactctaaaatattgcacaaatatttgccgttcatcagtattctctgtttttcacttttatactaagtgtccaaatactttttgagaataacgaagttcataaaat | tctttcaacattacaattttcaactttcaaattaacagtcattttaccataatttgattattatcatggtttccatgttagttttcttttgctaattatgaaaaaagagtttccaatatgaaaatagatgttaactcaccaactatcacaaatgcaacgataagtgataaaaatatgtaatcagtcacaacgatatctccgagtccgactgttacaatcaaattgaaaccaaaatgaaacgcatgaatgaaagaccaagttctagaagattatagtacacaaatattcaaaaaaccttga | |||
Mapping_target | T06H11 | ||||
Type_of_mutation | Substitution | A | G | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (19) | |||||
Laboratory | RW | ||||
Person | WBPerson6900 | ||||
WBPerson1562 | |||||
Analysis | WGS_Pasadena_Quinlan | ||||
Million_mutation_project_reanalysis | |||||
WGS_Hawaiian_Waterston | |||||
History | Acquires_merge | WBVar00082174 | |||
Status | Live | ||||
Affects | Gene | WBGene00006792 | |||
Transcript | T06H11.1b.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | T06H11.1b.1:c.1279+140T>C | ||||
Intron_number | 10/12 | ||||
T06H11.1g.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T06H11.1g.1:c.1153+140T>C | ||||
Intron_number | 9/12 | ||||
T06H11.1f.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T06H11.1f.1:c.1468+140T>C | ||||
Intron_number | 12/14 | ||||
T06H11.1e.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T06H11.1e.1:c.1123+140T>C | ||||
Intron_number | 10/13 | ||||
T06H11.1d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T06H11.1d.1:c.1348+140T>C | ||||
Intron_number | 9/11 | ||||
T06H11.1a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T06H11.1a.1:c.1393+140T>C | ||||
Intron_number | 8/11 | ||||
T06H11.1c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T06H11.1c.1:c.1204+140T>C | ||||
Intron_number | 10/13 | ||||
Method | WGS_Pasadena_Quinlan |