WormBase Tree Display for Variation: WBVar00062059
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| WBVar00062059 | Name | Public_name | WBVar00062059 | ||
|---|---|---|---|---|---|
| Other_name (14) | |||||
| HGVSg | CHROMOSOME_III:g.7984909G>A | ||||
| Sequence_details | SMap | S_parent | Sequence | C06G4 | |
| Flanking_sequences | taatccatggggaaatgaacaggaatggaatggaccatggtcagacaattcacgcgaatggcgaagtgttccagattctgtaaaacaagatatgggactgaaattcgatcatgatggagagttttggatgtcatttgatgattttatgaggaatttcgagaaaatggaaatttgcaatcttggaccagatgttatggatgaagtctatcaaatgactggtgtcaaggccgctggaatggtttgggctgcaaatactcatgatggtgcatgggttagaaatcaaacagctggaggatgcag | aattacatcagtaagtaaatattcatctacaaatattttcaattttcaattcagacactttcgccaacaatccacaattccgagttcaacttaccgattcggatcctgatgatgatgatgaactctgcactgtaatattcgccgttttgcaaaaatacaggtagcgccaccagatagggaaatcatttttatttttccaatttttaagacgtaatctgaaacaagatggacttgacaacgtgccaattggatttgctgtctatgacgtgagactattgttattttgaagaaaaaacagga | |||
| Mapping_target | C06G4 | ||||
| Type_of_mutation | Substitution | G | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (37) | |||||
| Laboratory | AX | ||||
| RW | |||||
| Person | WBPerson6900 | ||||
| WBPerson4037 | |||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| SNP_Wicks | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar01266042 | |||
| WBVar00067308 | |||||
| WBVar00564188 | |||||
| WBVar01331357 | |||||
| WBVar00243072 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00000542 | |||
| Transcript | C06G4.2d.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | C06G4.2d.1:c.1887G>A | ||||
| HGVSp | CE30486:p.Arg629= | ||||
| cDNA_position | 1887 | ||||
| CDS_position | 1887 | ||||
| Protein_position | 629 | ||||
| Exon_number | 9/15 | ||||
| Codon_change | agG/agA | ||||
| Amino_acid_change | R | ||||
| C06G4.2a.2 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | C06G4.2a.2:c.1950G>A | ||||
| HGVSp | CE37743:p.Arg650= | ||||
| cDNA_position | 2120 | ||||
| CDS_position | 1950 | ||||
| Protein_position | 650 | ||||
| Exon_number | 11/17 | ||||
| Codon_change | agG/agA | ||||
| Amino_acid_change | R | ||||
| C06G4.2c.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C06G4.2c.1:c.*1792G>A | ||||
| cDNA_position | 2223 | ||||
| Exon_number | 10/15 | ||||
| C06G4.2b.2 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | C06G4.2b.2:c.1812G>A | ||||
| HGVSp | CE37744:p.Arg604= | ||||
| cDNA_position | 1907 | ||||
| CDS_position | 1812 | ||||
| Protein_position | 604 | ||||
| Exon_number | 9/17 | ||||
| Codon_change | agG/agA | ||||
| Amino_acid_change | R | ||||
| C06G4.2a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | C06G4.2a.1:c.1950G>A | ||||
| HGVSp | CE37743:p.Arg650= | ||||
| cDNA_position | 2045 | ||||
| CDS_position | 1950 | ||||
| Protein_position | 650 | ||||
| Exon_number | 10/16 | ||||
| Codon_change | agG/agA | ||||
| Amino_acid_change | R | ||||
| C06G4.2b.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | C06G4.2b.1:c.1812G>A | ||||
| HGVSp | CE37744:p.Arg604= | ||||
| cDNA_position | 1907 | ||||
| CDS_position | 1812 | ||||
| Protein_position | 604 | ||||
| Exon_number | 9/16 | ||||
| Codon_change | agG/agA | ||||
| Amino_acid_change | R | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00004703 | |||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
