WormBase Tree Display for Variation: WBVar00061779
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| WBVar00061779 | Name | Public_name | WBVar00061779 | ||
|---|---|---|---|---|---|
| Other_name (13) | |||||
| HGVSg | CHROMOSOME_III:g.7885409C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | ZK688 | |
| Flanking_sequences | ttaaatataaataagaaaaaacaatacaaaaccgattttccaatcatttacataaaaacttgttagctgataggagcacagattgaattgcaagtcaaacaattcaaactacaaatgaacatagttaaataaatagatatgaacaattaattgtaggtatatttgaacctaaaccgtaaaataacgtttcttagtctcgaaaaccggcattgttgagatatcatgaacgaggcggccaattttgattaaaactaatccaccgaagactgtactataacccgatgatttccaattatattc | gatacatttcactggatattgtttgtagttgttgatgaagttgatggacctgaagatcctgatgaagttcgtgttccagaagatgatgattgagaagtcaacggagatgatgtcgacaacgatgtcatcatcggtgccaccacatccacacagtcatcattatcctcgcgactgccgtcgtgattgcgttttcctggaagaaacgcctgatttgggtccagatgaggcgaccaaggcctgaatattagaaaaaaactagcacaggccaaatcagttcaattttttgacactttttattgt | |||
| Mapping_target | ZK688 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (37) | |||||
| Laboratory | AX | ||||
| RW | |||||
| Person | WBPerson6900 | ||||
| WBPerson4037 | |||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| SNP_Wicks | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00564139 | |||
| WBVar00248596 | |||||
| WBVar00066948 | |||||
| WBVar01331263 | |||||
| WBVar01265950 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00022800 | |||
| Transcript | ZK688.5c.1 | VEP_consequence | 3_prime_UTR_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | ZK688.5c.1:c.*4354G>A | ||||
| cDNA_position | 4937 | ||||
| Exon_number | 14/14 | ||||
| ZK688.5e.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | ZK688.5e.1:c.*9G>A | ||||
| cDNA_position | 4992 | ||||
| Exon_number | 13/13 | ||||
| ZK688.5c.2 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | ZK688.5c.2:c.*4360G>A | ||||
| cDNA_position | 4938 | ||||
| Exon_number | 14/14 | ||||
| ZK688.5b.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | ZK688.5b.1:c.*128G>A | ||||
| cDNA_position | 5022 | ||||
| Exon_number | 13/13 | ||||
| ZK688.5d.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | ZK688.5d.1:c.*128G>A | ||||
| cDNA_position | 5034 | ||||
| Exon_number | 13/13 | ||||
| ZK688.5a.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | ZK688.5a.1:c.*9G>A | ||||
| cDNA_position | 4978 | ||||
| Exon_number | 13/13 | ||||
| ZK688.5c.3 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | ZK688.5c.3:c.*4398G>A | ||||
| cDNA_position | 4976 | ||||
| Exon_number | 14/14 | ||||
| ZK688.5c.4 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | ZK688.5c.4:c.*4405G>A | ||||
| cDNA_position | 4967 | ||||
| Exon_number | 13/13 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00004703 | |||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
